Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j02
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.56 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.98 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 542 PPNSTTSM*GTLTPEIDLFVVSTLTQALASTFSST 438
           PP S+TS+  T+T        +T T A  +T ++T
Sbjct: 96  PPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -1

Query: 509  LTPE-IDLFVVSTLTQALASTFSSTY*FKFEQKYLPRARSMKAVRMSSLKRRWVSLIS-M 336
            L P+ +DL  ++++++ LAS   S Y   FE+  +    +   V +  L    V+L+   
Sbjct: 914  LAPDAVDLTQLTSVSEWLASIKMSRYAESFERSGVTTLEAAARVTVQELTALGVTLVGHQ 973

Query: 335  ANLLNSRPVARA 300
              ++NS    RA
Sbjct: 974  KKIMNSVTALRA 985


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 420 TEVSSASQEHEGRSHVLVETSVGF 349
           TEV S    HE  +  L   +VGF
Sbjct: 287 TEVKSVEMHHEALTEALPGDNVGF 310


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 375 VLVETSVGFVNLNGQSPQLASSGQ 304
           VL  +S+  ++LNG  P+L  S Q
Sbjct: 182 VLFISSLENISLNGIDPELTESEQ 205



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 530 LSWEDHRTTILGWRREAT 583
           L W    T  + WRR+ T
Sbjct: 494 LQWSSTHTLDVAWRRKVT 511


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 375 VLVETSVGFVNLNGQSPQLASSGQ 304
           VL  +S+  ++LNG  P+L  S Q
Sbjct: 220 VLFISSLENISLNGIDPELTESEQ 243



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 530 LSWEDHRTTILGWRREAT 583
           L W    T  + WRR+ T
Sbjct: 532 LQWSSTHTLDVAWRRKVT 549


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 TEVSSASQEHEGRSHVLVETSVGF 349
           TEV S    HE     +   +VGF
Sbjct: 230 TEVKSVEMHHEALQEAVPGDNVGF 253


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 TEVSSASQEHEGRSHVLVETSVGF 349
           TEV S    HE     +   +VGF
Sbjct: 287 TEVKSVEMHHEALQEAVPGDNVGF 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,431
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)