Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28i24
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 335 4e-93
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 187 2e-48
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 187 2e-48
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 173 2e-44
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 33 0.042
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 27 2.1
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 3.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 6.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 8.3
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 335 bits (823), Expect = 4e-93
Identities = 151/215 (70%), Positives = 173/215 (80%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 261
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 262 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 441
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 442 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 621
R+EAE CD LQGFQ +SKIREEYPDR+M TFS+ P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 622 EPYNATLSVHQLVENTDESYCIDNEALYDICFRTL 726
EPYNATLS+HQLVEN+DE++CIDNEAL I TL
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTL 215
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 187 bits (455), Expect = 2e-48
Identities = 88/221 (39%), Positives = 130/221 (58%), Gaps = 6/221 (2%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 243
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 244 TGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 423
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 424 SVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPK 603
SVL+ +R+ A+ C LQGF + ++ EY + FS+ P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 604 VSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTL 726
VS +VVEPYN+ L+ H ++N+D ++ +DNEA YDIC R L
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNL 221
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 187 bits (455), Expect = 2e-48
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 2/217 (0%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLER--INVYYNEATGGK 255
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 256 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 435
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 436 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 615
+R+ A+ C LQGF + ++ EY + FS+ P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 616 VVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTL 726
VVEPYN+ L+ H ++ D ++ +DNE+ YDIC R L
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNL 217
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 173 bits (421), Expect = 2e-44
Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
Frame = +1
Query: 85 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 264
REI+ +QAGQCGNQIG++FW+ + EHGI P GT + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 265 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 438
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 439 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVP-SPKVSDT 615
+ +EA+G D L+GF + ++ + YP +I+ T+S+ P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 616 VVEPYNATLSVHQLVENTDESYCIDNEALYDI 711
VV+PYN+ L++ +L N D +DN AL I
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 33.1 bits (72), Expect = 0.042
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 134 LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 256
L GKL P+ A +++ ++ TS++S +T +T+ EES
Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 412 PRLRCSDP*PSCCQHPIAQRQSC 344
PR +C D PSCC + +SC
Sbjct: 481 PRTQCVDTPPSCCGGHCCKEESC 503
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/36 (22%), Positives = 23/36 (63%)
Frame = -2
Query: 705 VQSLVVNAVRFICIFHQLMYGEGCVIRLNYGVRHFR 598
+++L+ A+ +C + + ++ E C ++N+ + HF+
Sbjct: 17 LKNLIFFAISTLC-YKRALFNENCYKKVNFEIEHFK 51
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 417
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 121 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 222
N++G EV++++ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 385 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 474
A+GH G ELV + D +RK++E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = -2
Query: 426 RIYQLRAFGVVTLSPVVASTRLPKDKVVRTEDLTEWSRAYRVHCPGLQVHKDSPRHVLSS 247
+I ++ F L + + D ++ EDL WS A+ + G + + + +L S
Sbjct: 325 QIIAMKGFDTAMLYVGMRKFKQAADAIIELEDLNSWSHAFYRYFAGCCLLQHG-KEILGS 383
Query: 246 G 244
G
Sbjct: 384 G 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,339
Number of Sequences: 5004
Number of extensions: 65348
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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