Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i23
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...   157   1e-39
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    46   4e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    46   5e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    46   5e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    44   3e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    32   0.084
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    29   0.45 
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    28   1.0  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   3.2  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   7.3  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   9.7  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score =  157 bits (382), Expect = 1e-39
 Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 11/205 (5%)
 Frame = +2

Query: 77  MDGDLYDEFGNYIGPDLESDSED----------EQSVYGQDNRXXXXXXXXXXXXXXXXX 226
           M+ DLYDEFGNYIGP+ E D E+           Q    ++                   
Sbjct: 1   MEEDLYDEFGNYIGPENEEDEEELFPQAPSPTIAQVPSFEEVIPDEELEDVERAEEMALS 60

Query: 227 XXXPMS-VVLHEDKRYYPQAVEVYGPDVETVVQEEDTQALDKPLVEPVKHKKFQVQEQQL 403
              P + VVLHEDK+YYP A EVYG +V+ +VQE+DTQ L +P++EP++HK+  ++   +
Sbjct: 61  HLEPQNAVVLHEDKQYYPSAEEVYGSNVDIMVQEQDTQPLSQPIIEPIRHKRIAIETTNV 120

Query: 404 PETTYDMEYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYT 583
           P+T Y  E++  +L  T+ +R+  + GHLH+GK++ +D L+  THP T        +RYT
Sbjct: 121 PDTVYKKEFLFGLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDT-KPPKRRSLRYT 179

Query: 584 DTLFVEQERGVSIKSMPVTLLLKDI 658
           DT ++E+ER +SIKS P+TL + D+
Sbjct: 180 DTHYLERERVMSIKSTPLTLAVSDM 204


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 25/78 (32%), Positives = 42/78 (53%)
 Frame = +2

Query: 425 EYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQ 604
           E +  +  N   IRN TL+ H+ +GKT+  D L+     G I+++    +R+ D    E 
Sbjct: 7   EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASN--GIISSKLAGTVRFLDFREDEI 64

Query: 605 ERGVSIKSMPVTLLLKDI 658
            RG+++KS  ++L  K I
Sbjct: 65  TRGITMKSSAISLFFKVI 82


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%)
 Frame = +2

Query: 425 EYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQ 604
           E + +++   + +RN++++ H+ +GK++  D L+++   G I+       R+ DT   EQ
Sbjct: 7   EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKA--GIISAAKAGDARFMDTRADEQ 64

Query: 605 ERGVSIKSMPVTL 643
           ERGV+IKS  ++L
Sbjct: 65  ERGVTIKSTAISL 77


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%)
 Frame = +2

Query: 425 EYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQ 604
           E + +++   + +RN++++ H+ +GK++  D L+++   G I+       R+ DT   EQ
Sbjct: 7   EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKA--GIISAAKAGDARFMDTRADEQ 64

Query: 605 ERGVSIKSMPVTL 643
           ERGV+IKS  ++L
Sbjct: 65  ERGVTIKSTAISL 77


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 20/64 (31%), Positives = 40/64 (62%)
 Frame = +2

Query: 455 NLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSIKSMP 634
           N +RN  ++ H+ +GK++  DC+++ T  G I NE     ++ D L VE+ RG+++K+  
Sbjct: 56  NRVRNWAVIAHIDHGKSTLSDCILKLT--GVI-NEHNFRNQFLDKLEVERRRGITVKAQT 112

Query: 635 VTLL 646
            +++
Sbjct: 113 CSMI 116


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 31.9 bits (69), Expect = 0.084
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +2

Query: 455 NLIRNITLMGHLHNGKTSFVDCLMR----QTHPGTINNETTIPIRYTDTLFVEQERGVSI 622
           N IRN+ ++ H+  GKT+  + ++      +H G ++   T+     D L  E++RG++I
Sbjct: 26  NSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTV----MDYLPAERQRGITI 81

Query: 623 KSMPVT 640
            S  ++
Sbjct: 82  NSAAIS 87


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 470 ITLMGHLHNGKTSFVDCLMRQTHPGT 547
           +TLMGH+ +GKT+ +D   + T   T
Sbjct: 174 VTLMGHVDHGKTTLLDAFRKSTIAST 199


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +2

Query: 461 IRNITLMGHLHNGKTSFVDCLMRQT----HPGTINNETTIPIRYTDTLFVEQERGVSIKS 628
           IRNI +  H+ +GKT+F + ++  T        +  +  +  +  D + +E+E+G++I+S
Sbjct: 59  IRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAK-MDFMELEREKGITIQS 117


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 65  SILKMDGD-LYDEFGNYIGPDLESDSEDEQSVYGQD 169
           S LK+ G  ++  FGN++G  +   +E+E+S   +D
Sbjct: 561 SNLKVKGSSIFQRFGNFVGDTMRYITEEEESSEEED 596


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 516 STKDVFPLCKWPINVIFLIK 457
           S+ DV P+ KWPIN I  ++
Sbjct: 383 SSFDVEPIRKWPINQILTVE 402


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 609 RSCSTNRVSVYLIGIVVSLLIVPGCVCLM 523
           R C      VY+ G++V L  +P  V +M
Sbjct: 86  RKCIMGWTLVYITGVIVQLTTIPSWVQMM 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,811
Number of Sequences: 5004
Number of extensions: 49684
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)