Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i23
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   199   2e-51
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        82   3e-16
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    48   8e-06
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    48   8e-06
Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...    45   4e-05
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...    45   4e-05
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    34   0.10 
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z81509-1|CAB04154.1|  332|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score =  199 bits (485), Expect = 2e-51
 Identities = 97/196 (49%), Positives = 129/196 (65%), Gaps = 3/196 (1%)
 Frame = +2

Query: 77  MDGDLYDEFGNYIGPDLESDSE--DEQSVYGQDNRXXXXXXXXXXXXXXXXXXXXPMS-V 247
           MD DLYDEFGNYIGP+L+SD +  D       ++R                    P + V
Sbjct: 1   MDSDLYDEFGNYIGPELDSDDDAGDIDDNGDDEDRSDVDEDDEPDRMEEDDAEEIPQNQV 60

Query: 248 VLHEDKRYYPQAVEVYGPDVETVVQEEDTQALDKPLVEPVKHKKFQVQEQQLPETTYDME 427
           VLHEDK+YY  A+EVYG  VET+VQEED Q L +P+V+PV  KKFQ  E+ LPET Y  E
Sbjct: 61  VLHEDKKYYATALEVYGEGVETLVQEEDAQPLTEPIVKPVSKKKFQAAERFLPETVYKKE 120

Query: 428 YMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQE 607
           Y+AD++D  +++RN+ + GHLH+GKT+F+DCLM QTHP     E     R+TD LF+E++
Sbjct: 121 YLADLMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDA-DARFTDILFIEKQ 179

Query: 608 RGVSIKSMPVTLLLKD 655
           RG SIKS PV+++ +D
Sbjct: 180 RGCSIKSQPVSIVAQD 195


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/71 (49%), Positives = 52/71 (73%)
 Frame = +2

Query: 443 LDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSI 622
           +D  +++RN+ + GHLH+GKT+F+DCLM QTHP     E     R+TD LF+E++RG SI
Sbjct: 1   MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDA-DARFTDILFIEKQRGCSI 59

Query: 623 KSMPVTLLLKD 655
           KS PV+++ +D
Sbjct: 60  KSQPVSIVAQD 70


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = +2

Query: 461 IRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSIKSMPVT 640
           IRN+ L+ H+ +GKTSF D L+       I++     +RY D+   EQ RG+++KS  ++
Sbjct: 20  IRNVCLVAHVDHGKTSFADSLVSAN--AVISSRMAGKLRYMDSREDEQTRGITMKSSGIS 77

Query: 641 LLLKDI 658
           LL + +
Sbjct: 78  LLCEPL 83


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = +2

Query: 461 IRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSIKSMPVT 640
           IRN+ L+ H+ +GKTSF D L+       I++     +RY D+   EQ RG+++KS  ++
Sbjct: 20  IRNVCLVAHVDHGKTSFADSLVSAN--AVISSRMAGKLRYMDSREDEQTRGITMKSSGIS 77

Query: 641 LLLKDI 658
           LL + +
Sbjct: 78  LLCEPL 83


>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/79 (29%), Positives = 45/79 (56%)
 Frame = +2

Query: 416 YDMEYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLF 595
           + ++ +  ++D    IRN++++ H+ +GK++  D L+ +   G I        R+TDT  
Sbjct: 4   FTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKA--GIIAGSKAGETRFTDTRK 61

Query: 596 VEQERGVSIKSMPVTLLLK 652
            EQER ++IKS  ++L  +
Sbjct: 62  DEQERCITIKSTAISLFFE 80


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/79 (29%), Positives = 45/79 (56%)
 Frame = +2

Query: 416 YDMEYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLF 595
           + ++ +  ++D    IRN++++ H+ +GK++  D L+ +   G I        R+TDT  
Sbjct: 4   FTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKA--GIIAGSKAGETRFTDTRK 61

Query: 596 VEQERGVSIKSMPVTLLLK 652
            EQER ++IKS  ++L  +
Sbjct: 62  DEQERCITIKSTAISLFFE 80


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 461 IRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSIKSMPVT 640
           +RNI ++ H+  GKT+  + L+       +          TD L +E+ERG++++S  V 
Sbjct: 25  LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84

Query: 641 L 643
           L
Sbjct: 85  L 85


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 461 IRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSIKSMPVT 640
           IRN  ++ H+ +GK++  D L+     G +        +  D L VE+ERG+++K+    
Sbjct: 42  IRNFGIVAHVDHGKSTLADRLLEMC--GAVPPGQK---QMLDKLQVERERGITVKAQTAA 96

Query: 641 L 643
           L
Sbjct: 97  L 97


>Z81509-1|CAB04154.1|  332|Caenorhabditis elegans Hypothetical
           protein F21A3.1 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -3

Query: 642 NVTGMDFIDTPRSCSTNRVSVYLIGIVVSLLIVPGCVCLMRQSTKDVFPLCKWPINVIFL 463
           N +   F+DTP+  ST   ++ +IG+ V +    G +C++ ++   +  + KWP+  + L
Sbjct: 4   NTSFAKFLDTPQFLSTTMYTITIIGLPVHIF---GGLCVVFKTPTQMCNM-KWPMLTLLL 59


>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 YMADMLDNTNLIRNITLMGHLHNGKTSFVDC 520
           Y+A  + N  L+R +   G +HN K   +DC
Sbjct: 108 YLASSMANEILLRRMYSRGVVHNDKVELLDC 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,796
Number of Sequences: 27780
Number of extensions: 282796
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)