Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i22
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   0.49 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   1.5  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   2.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   4.5  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   6.0  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   7.9  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.9  

>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 135 LIVSPFLSCVPCCDCCMNYIIPEESKEVRI--TYCILLIAIGSAVLR*SLQSSNQGYNKN 308
           L++  F++C+    C M + IP+ +   R+   +  + +   SA+L   + S+  GY K 
Sbjct: 367 LLIGVFMNCLTLAGCLMIWKIPDSNPYGRLVGVWFTMWVPASSALLLSLISSNVAGYTKK 426

Query: 309 CI 314
            +
Sbjct: 427 TV 428


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 99  SYQMCLLVYILPLIVSPFLSCVPCCDCCMNYII--PEESKEVRITYCIL 239
           +Y + LL+    L + PFL+ V  C+CC + ++  P+  +++   +C L
Sbjct: 108 AYMLDLLLPFFTLDLLPFLNKV--CECCNHMLLDNPKIKQDLPFAFCYL 154


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 456 SPIIACFPILCPCFIACC 509
           S ++  F   CPCF++CC
Sbjct: 4   SGMLFIFATFCPCFLSCC 21


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 503 SYETRAQYREASYNGAKQKRAGNHAAREN 417
           S + R+++ E SY+    +R+GN A RE+
Sbjct: 15  SRDRRSRFTEDSYSRRDSQRSGNEAPRES 43


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 27  LNKIKLNQYDNVHLKNQ*YKKKPLSYQMCLLVYILPLIVSPFLSCV 164
           L ++ L +Y  + +     K   +S   CLL Y++ L+V PF S +
Sbjct: 37  LMQLLLAKYYQIPIDLVGEKLSIVSASSCLLQYLVALVVVPFYSTI 82


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 93  PLSYQMCLLVYILPLIVSPFLSCVPCCDCCMNYIIPEESKEVRIT 227
           P    +CLL+ +    +     CVP  D  + Y  P +S+   +T
Sbjct: 26  PHKLTLCLLIELYAHRIIQPQHCVPFLDLVLGYFNPNDSQPQTLT 70


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 524 FIFGRAASYETRAQYREASYNGAKQKRAGNHA-ARENTTHSVQNPFALQNIRSEFSSNVF 348
           FIF  + S E    ++ + Y      R  N   ARE+T  SV +PF+  +  +  +++VF
Sbjct: 329 FIFENSPSAEF--SHQSSPYLVPNSGRTLNSENARESTIRSVNSPFSEDHADASLTTHVF 386


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 374 LYFGVQMD-FEQNVLYFPVLHGYLPVSA*PH 463
           +Y G Q D +   V+ + +L GYLP    PH
Sbjct: 688 MYAGTQADIWSCGVILYAMLAGYLPFDDDPH 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,697
Number of Sequences: 5004
Number of extensions: 46477
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)