Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i22
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0427 + 21161854-21161949,21162089-21162291,21162493-211625...    29   2.0  
05_04_0425 + 21156201-21156308,21156425-21156624,21156726-21156972     29   2.0  
05_04_0421 + 21114569-21114664,21115042-21115223,21115376-21115640     29   2.0  
05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664     29   3.5  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    28   6.1  
05_04_0424 + 21150701-21150808,21150923-21151162,21151233-21151499     28   6.1  
05_04_0419 + 21103418-21103597,21103768-21103931,21104420-21104846     27   8.1  

>05_04_0427 +
           21161854-21161949,21162089-21162291,21162493-21162571,
           21162581-21162940
          Length = 245

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  YKKKPLSYQMCLLVYILPLIVSPFLSCVP-CCDCCMNYIIPEESKEVRITYCILLIAIGS 257
           Y + P S+ + +   I  L+    ++ V  CC CC +  IP E+K +    C ++  I +
Sbjct: 45  YPQNP-SFALGICAAIFLLMAQITVTAVGGCCGCCKSRAIPSETKRIVGIVCAVVSWIAA 103

Query: 258 AV 263
            V
Sbjct: 104 GV 105


>05_04_0425 + 21156201-21156308,21156425-21156624,21156726-21156972
          Length = 184

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 108 MCLLVYILPLIVSPFLSCVP-CCDCCMNYIIPEESKEVRITYCILLIAIGSAV 263
           +C  V++L   ++  +S V  CC CC +  IP E+K +    C ++  I + +
Sbjct: 58  VCAAVFLLLAQIT--VSAVGGCCGCCKSRSIPSETKRIIGVICAVMSWIAAGI 108


>05_04_0421 + 21114569-21114664,21115042-21115223,21115376-21115640
          Length = 180

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 168 CCDCCMNYIIPEESKEVRITYCILLIAIGSAV 263
           CC CC +  IP E+K +    C ++  I + +
Sbjct: 67  CCGCCKSRAIPSETKRIVGVVCAVISWIAAVI 98


>05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664
          Length = 263

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 168 CCDCCMNYIIPEESKEVRITYCILLIAIGSAVLR*SLQSSNQGYNKNCI 314
           CC CC +  IP E+K +    C +   I +AV+   L         NC+
Sbjct: 75  CCGCCKSRAIPSETKRIVGVVCAVFSWI-TAVIAFVLFLDGAIVESNCV 122


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 198 PEESKEVRITYCILLIAIGSAVLR*SLQSSNQGYNKNCIERRKFVREIFKK 350
           PE+ K  R+      +AIG   L   L++  +GY  +C+ + +   E+++K
Sbjct: 366 PEQEKSERVLSQDSKLAIGIRELMALLRTLGEGYRLSCLFKCQEALEVYRK 416


>05_04_0424 + 21150701-21150808,21150923-21151162,21151233-21151499
          Length = 204

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 108 MCLLVYILPLIVSPFLSCVP-CCDCCMN-YIIPEESKEVRITYCILL 242
           +C  V++L  +V   +S V  CC CCM+   IP E+K +    C ++
Sbjct: 60  VCAAVFLL--LVQITVSAVGGCCGCCMSGRSIPSETKRIIGVVCAVM 104


>05_04_0419 + 21103418-21103597,21103768-21103931,21104420-21104846
          Length = 256

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 168 CCDCCMNYIIPEESKEVRITYCILLIAIGSAV 263
           CC CC +  +P E+K +    C  +  + + +
Sbjct: 89  CCGCCKSRAVPSETKRIVGVVCASISWVAAVI 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,407
Number of Sequences: 37544
Number of extensions: 248152
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)