Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i22
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 33  KIKLNQYDNVHLKNQ 77
           K+KL+Q  +V+LKNQ
Sbjct: 59  KLKLSQLIDVNLKNQ 73


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 33  KIKLNQYDNVHLKNQ 77
           K+KL+Q  +V+LKNQ
Sbjct: 59  KLKLSQLIDVNLKNQ 73


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 33 KIKLNQYDNVHLKNQ 77
          K+KL+Q  +V+LKNQ
Sbjct: 55 KLKLSQLIDVNLKNQ 69


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = -3

Query: 524 FIFGRAASYETRAQYREASYNGAKQ-KRAGNHAARENTT-HSVQNPFALQ-NIRSEFSSN 354
           F   R A+Y T  +     Y G KQ K    HA R   +   V  P     NI  ++S  
Sbjct: 411 FRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKYSRI 470

Query: 353 VFFKYFSNKFTSFNAVF 303
           +    F   F  FNA++
Sbjct: 471 I----FPVSFMLFNAIY 483


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +3

Query: 144 SPFLSCVPCCDCCMNYIIPEESKEVRITYCILLIAIG 254
           +P   C   C+C ++ I     +  ++ +CI   A G
Sbjct: 469 TPIYECNKRCNCDIDCINRVVQRGTKMQFCIFRTANG 505


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 114 LLVYILPLIVSPFLS 158
           L ++ILPLIVS  +S
Sbjct: 107 LKMFILPLIVSSLIS 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,938
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)