Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28i18
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 52 7e-08
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 42 6e-05
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 30 0.32
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 29 0.75
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 2.3
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.0
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 3.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 7.0
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.0
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.2
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 52.0 bits (119), Expect = 7e-08
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Frame = +2
Query: 236 LLLGKTFPDFSA----NTTEGEINFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPE 403
L +GK PDF N EI ++ G KW L +P DFT VC TE+ +
Sbjct: 3 LQIGKPAPDFKGTAVVNGAFEEIKLADYKG-KWVFLGFYPLDFTFVCPTEIVAFSEAASK 61
Query: 404 FVKRNTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDND 583
F +RN +VI S DS SHL + + G P++ D +++ G++ D
Sbjct: 62 FAERNAQVILTSTDSEYSHLAFINTPRKEGGLG---GINIPLLADPSHKVSRDYGVLIED 118
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 42.3 bits (95), Expect = 6e-05
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +2
Query: 242 LGKTFPDFSANTTEG-EINFHEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRN 418
+G PD + +G I + +K ++F++P TP CT + P+ +
Sbjct: 48 VGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASD 107
Query: 419 TKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLG 568
+V+GLS D+ + K+F + + FPY ++ D K EL KLG
Sbjct: 108 YEVLGLSFDTSKAQ-------KAF---KDKQNFPYHLLSDPKGELIKKLG 147
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 416 NTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMI 574
NT VIG++ D+V + +W + F P+I D E+ ++GM+
Sbjct: 141 NTDVIGITTDTVENICQWKAHLPRAL------QFSLPVISDSNNEICREMGML 187
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 28.7 bits (61), Expect = 0.75
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 314 DKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSSHLEWCKDIKSF 490
D W L HP + +C+T L R+ V + E+V R+ ++ + + H ++ D F
Sbjct: 319 DSWSKLGIHPQNHM-ICSTPLFRLWVGVSEYVFRHPGLLDSCIYTATKHNDFSPDDLEF 376
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 221 YFKNIFLSVFCVFFLRQITQYYKSNYTSVKRSIQIQYTKYTSMLVF*MEYKYS 63
+ K F S+ V +QY KSN + RS+ +Y + +F MEY +S
Sbjct: 254 FVKKNFFSIIMVLESLAKSQYRKSNVLAADRSL----CEYIILTLFHMEYLFS 302
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 425 VIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPYPIIEDEK--RELANK 562
++GLS V+ +E + ++ D+P + EDE+ RELAN+
Sbjct: 55 LLGLSDPQVAEEMEQAETSYAYDTAAHDDPVQRQLEEDERCARELANR 102
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = -1
Query: 492 AKDLMSLHHSK*EDTLSQDRPMTFVLRFTNSGRRTSTRANSVVQTGVKSD 343
AK L S H S EDT D+P F + R S S G SD
Sbjct: 245 AKILNSSHGSHEEDTHHADKPQAHSRSFVGTARYVSPEVLSDKIAGTASD 294
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -3
Query: 628 EDCTGCQRHS-FVIQFVIVN----HAELVGQLSLLVFNYRIRKWFVFIATSKRLNVLAPF 464
E CT ++H+ ++ F N + ELV +LL + + ++ F+ K+L F
Sbjct: 227 EICTETEQHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHFLSSFVEKKLPCFPIF 286
Query: 463 QVRGY 449
V+GY
Sbjct: 287 VVKGY 291
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/67 (25%), Positives = 25/67 (37%)
Frame = -3
Query: 592 IQFVIVNHAELVGQLSLLVFNYRIRKWFVFIATSKRLNVLAPFQVRGYTVTGQANDFCVA 413
I +I N+AE G F R W K + +R + G DF V
Sbjct: 1209 IAIIISNYAERTGSA---FFTAEQRAWLELRRKIKSMRPSKRPAIRPLGLRGLCYDFAVQ 1265
Query: 412 LHKLWKK 392
H +W++
Sbjct: 1266 KHGIWRR 1272
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 332 FSHPSDFTPVCTTELARVLVL 394
+SHP DF P+ TE +V+ +
Sbjct: 189 YSHPLDFCPIIDTEDQKVVAI 209
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 287 EINFHEWLGDK 319
E+NF+EWL DK
Sbjct: 291 EVNFYEWLNDK 301
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = -2
Query: 317 YLLATRENLFRLLLCWQRSLEKFFQVKAC*KIYFKNIFLSVFCVFFLRQITQYYKSNYTS 138
Y L+ EN ++ L CW + LEK ++ Y + ++ C + I ++++ +
Sbjct: 274 YFLSYVENRYQSLDCWNKFLEK--EIDPSFIKYCTKLEVTAGCT-LISYIADRLQNSHPN 330
Query: 137 VKRSIQIQYTKY 102
++ I++ +Y
Sbjct: 331 IQPPIRVSLNEY 342
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 631 NEDCTGCQRHSFVIQFVIVNHAELVGQLSLLVFNY 527
NEDC RH + ++ NH++L S +NY
Sbjct: 560 NEDCILAARHLISLVHLLQNHSQL-SCYSFFDYNY 593
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,187
Number of Sequences: 5004
Number of extensions: 57127
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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