Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i13
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    37   2e-04
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 461 NINILDLSHNNITKLN-HELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 637
           N+ IL+L+ N +  +  +  +R   +  + L  N + ++N    +   L+ LNL+ N I+
Sbjct: 503 NLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIE 562

Query: 638 ELAMSHLPASVSSLDLTNNLLRDV 709
               + +P ++  LD+  N +  +
Sbjct: 563 WFDYAFIPGNLKWLDIHGNFIESL 586



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +2

Query: 473 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL-NKFLHNAKKLVHLNLANNRIKELAM 649
           LDLS N +T +   L  L  + TLDL  N I N  N    N  +L  L L  N I  L+ 
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495

Query: 650 SHL--PASVSSLDLTNNLLRDVPSDLWAFDK 736
             L    ++  L+L  N ++ V  + +AF++
Sbjct: 496 GMLWDLPNLQILNLARNKVQHV--ERYAFER 524



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 470 ILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL-NKFLHNAKKLVHLNLANNRIKELA 646
           +L+LS N+I   ++       +  LD+  N I++L N +     K+  L+ ++NRI EL+
Sbjct: 553 LLNLSENHIEWFDYAFIP-GNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELS 611

Query: 647 MSHLPASVSSLDLTNNLL 700
              +P SV  L + NN +
Sbjct: 612 PLSVPDSVELLFINNNYI 629



 Score = 25.4 bits (53), Expect = 0.57
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 464 INILDLSHNNITKLNHELDR-LTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRI 634
           +N L LS N I  ++    R  +++  LDLS N + ++   L +   L  L+L  NRI
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRI 466


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 346 SNRLSRKLRLQYYSRWLTSCHVQ 414
           S  LS K R +Y++R + S H Q
Sbjct: 245 SPELSNKQRFEYFTRTIPSDHYQ 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,816
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)