Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i09
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...   150   2e-37
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   2.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   3.8  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   5.1  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.1  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   6.7  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    25   8.9  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    25   8.9  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  150 bits (363), Expect = 2e-37
 Identities = 68/91 (74%), Positives = 76/91 (83%)
 Frame = +3

Query: 486 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 665
           MSY L HLH+GW VDQAILSE++R+VVIRFG D D  C+K DEVLY IAEKV N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 666 VDITEVPDFNKMYELYDPCTVMFFFRTKHIM 758
           VDI EVPDFNKMYELYD  T+MFF+R KH+M
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMM 91


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 1014

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 28 FTSFHPYHY*LHIKLI 75
          FT  HPY+Y  HIKLI
Sbjct: 35 FTILHPYNYDSHIKLI 50


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 370 QILILFCSLKFAFHI*DIPKLFYSHILFLVTVHVFY 263
           Q+++L C L +  +  DIP+ F  H+   +T  + Y
Sbjct: 203 QVILLECKLFYDLNCQDIPEFFEDHMSEFMTAFLNY 238


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 721 HGSYNSYILLKSGTSVMSTK 662
           HG+Y+SY  ++ GTS++  +
Sbjct: 6   HGNYHSYYSMRGGTSIIDPR 25


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 310 LFYSHILFLVTVHVFYRSVFKKFRA 236
           +F+ ++  ++  + F+R VFKK++A
Sbjct: 173 VFHGYLTSILEAYEFFRGVFKKYKA 197


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 362 DIILLTEICLSHLRHSKVI 306
           DI+LL+++  +H  HSK+I
Sbjct: 157 DILLLSDLVFNHTEHSKLI 175


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 552 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCT 725
           D+V V+ F  DW   C  +   L  ++E+ +  +F  +     +++   N +Y L  P  
Sbjct: 35  DKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYAL--PTM 92

Query: 726 VMF 734
           V+F
Sbjct: 93  VLF 95


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 374 SGPTTRLYFAHSNSNFQKKEYRNNRLFEIIRKVVYLQNELYARTSTQWLASRSGHSIRRR 553
           SGP  R+ F + + N+     R+N+    + K +YL  +   +     L  R   S   R
Sbjct: 245 SGPYRRVAFTYQDENYYYISGRSNKDIGELSKKMYLMYKQAYKDLNASLRERRRRSTSNR 304

Query: 554 PCSG 565
             SG
Sbjct: 305 RNSG 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,650
Number of Sequences: 5004
Number of extensions: 65978
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)