Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28i09
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 163 1e-40
10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836 144 9e-35
11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872 48 6e-06
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 29 4.0
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 29 5.3
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 9.3
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 163 bits (396), Expect = 1e-40
Identities = 73/93 (78%), Positives = 83/93 (89%), Gaps = 2/93 (2%)
Frame = +3
Query: 486 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMK--MDEVLYSIAEKVKNFAVI 659
MSY+L HLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+ MDEVL ++AE +KNFAVI
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQGMMDEVLAAVAETIKNFAVI 60
Query: 660 YLVDITEVPDFNKMYELYDPCTVMFFFRTKHIM 758
YLVDITEVPDFN MYELYDP TVMFFFR KHIM
Sbjct: 61 YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIM 93
>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
Length = 168
Score = 144 bits (348), Expect = 9e-35
Identities = 73/117 (62%), Positives = 83/117 (70%), Gaps = 26/117 (22%)
Frame = +3
Query: 486 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMK-------------------- 605
MSY+L HLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQICCGDDLDSFARFRILWREL 60
Query: 606 ------MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRTKHIM 758
MDEVL ++AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFR KHIM
Sbjct: 61 SVYLTTMDEVLAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIM 117
>11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872
Length = 130
Score = 48.4 bits (110), Expect = 6e-06
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 489 SYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 668
S +L L +VD AI D+V+V+RFG D C+ +D++L + + FA + LV
Sbjct: 3 SALLPTLRRKPEVDAAIRDTLDKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALV 62
Query: 669 DI--TEVPDFNKMYELYDPCTVMFFFRTKHI 755
D+ E+ + +++ +FFF +H+
Sbjct: 63 DMDSEEMQVYIDYFDITLVPATIFFFNAQHM 93
>08_02_1540 + 27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 410 NSNFQKKEYRNNRLFEIIRKVVYLQN-ELYARTSTQWLASRSGHSIRRRPCSGYKVWTR 583
+ +FQK E R ++ + YL + +LYA ++ LA +R C GY+ W R
Sbjct: 1222 SDDFQKTEQRGCISGRLLVRDRYLDDADLYATSAYVGLALPGDVGSWQRECKGYQFWCR 1280
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +3
Query: 504 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV 683
H + W + + ++VVI F W C + V +A+K N AV VD+ E+
Sbjct: 18 HSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTN-AVFLKVDVDEL 76
Query: 684 PDFNKMYELYDPCTVMF 734
+ + + T +F
Sbjct: 77 KPIAEQFSVEAMPTFLF 93
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 485 NELYARTSTQWLASRSGHSIRRRPCSGYKVWTRLGPNMY 601
+E+ + T T +L +RSGH + + C G V + + +Y
Sbjct: 1405 HEIGSSTKTLYLQNRSGHVVAKGNCDGGTVSSDVAAGIY 1443
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,281
Number of Sequences: 37544
Number of extensions: 348028
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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