Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i09
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   1.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.2  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 307 ITLECLRCERQISVSKIISIFVQWSYNTIIFC 402
           +TL  +  E  I  + +I+ +  WSYN + +C
Sbjct: 86  LTLGYVTREVSIDGNPLIAPYPNWSYNDVKYC 117


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 218 YFITKRMFLKKITDHSMTYDSSSSIFQQERRRYQSIQRNLSWNYSVIYIN 69
           YF    + +  I + SMTY +   + Q  R     +  N+S +Y ++ ++
Sbjct: 33  YFHVTVLSIDSINEESMTYVADIFLAQSWRDSRLRLPENMSEDYRILDVD 82


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 218 YFITKRMFLKKITDHSMTYDSSSSIFQQERRRYQSIQRNLSWNYSVIYIN 69
           YF    M L  I ++SMTY +     Q  +     +  N++  Y ++ ++
Sbjct: 64  YFHVTVMGLDSIDENSMTYAADIFFAQTWKDNRLRLPENMTSEYRLLEVD 113


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 455 EIIRKVVYLQNELYARTSTQWLASRSGHSIRRRPCSGYK 571
           E+I ++VY QNE Y + S + L   +         S YK
Sbjct: 337 ELIHRLVYFQNE-YEQPSEEDLKRITNQPSEGEDISDYK 374


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 404 HSNSNFQKKEYRNN 445
           H+N+N+    Y NN
Sbjct: 324 HNNNNYNNNNYNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,206
Number of Sequences: 438
Number of extensions: 4701
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)