Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i08
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.3  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   5.8  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +1

Query: 58  VSLICYLLYLIHPYWILFLSIVMIYTMYTQFIVIN*HVFFFKSNVQNNNGFA*LQFVNTS 237
           + L+C LL  I P W  ++  V +  +   F++   ++ +    V    GF    F+ ++
Sbjct: 185 ILLVCVLLNFIPPKWFRYIFRVSVAVILLDFVL---NMIWLPIAVSTKYGFRDEAFMKST 241

Query: 238 HADSAVLN 261
           + D   +N
Sbjct: 242 NYDLGKVN 249


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -2

Query: 384 YRKRPKSRKYLQKTSYFLNVTTFVIR---SKFN 295
           +RK+  S + + +  YFLN++TF I    SK+N
Sbjct: 90  FRKKNPSFEKVSELLYFLNISTFPIELVISKYN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,533
Number of Sequences: 5004
Number of extensions: 64767
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)