Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28i02
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50045-3|CAA90364.1| 210|Caenorhabditis elegans Hypothetical pr... 202 2e-52
AF304123-1|AAG50236.1| 210|Caenorhabditis elegans adenylate kin... 202 2e-52
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 102 3e-22
L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical p... 100 1e-21
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 78 5e-15
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 78 5e-15
Z48585-2|CAA88479.1| 222|Caenorhabditis elegans Hypothetical pr... 61 8e-10
Z68342-6|CAD89740.1| 418|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 5.5
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 5.5
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 28 5.5
AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein. 28 5.5
AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein. 28 5.5
AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein. 28 5.5
>Z50045-3|CAA90364.1| 210|Caenorhabditis elegans Hypothetical
protein F38B2.4 protein.
Length = 210
Score = 202 bits (493), Expect = 2e-52
Identities = 101/169 (59%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
Frame = +2
Query: 185 MAPIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTA 364
+AP+ + I +++GGPGSGKGTQCDKIVAKYG THLS+GDLLR EVKSGS R LTA
Sbjct: 12 LAPLKAAGVPIFFIVGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTA 71
Query: 365 IMERGELVPNEIVLDLLKEAILARAEE-SKGFLIDGYPREKSQGIAFEENIAPVSVIIYF 541
IME G LVP E+VLDL+KEA+L E+ SKGFLIDGYPRE +QG FE I ++++F
Sbjct: 72 IMESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQEAKLVLFF 131
Query: 542 EASSETLTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPDK 688
+ + ETL +RLL RA +SGRADDN +TIK RL TF+ + V+ Y K
Sbjct: 132 DVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESK 180
>AF304123-1|AAG50236.1| 210|Caenorhabditis elegans adenylate kinase
1 protein.
Length = 210
Score = 202 bits (493), Expect = 2e-52
Identities = 101/169 (59%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
Frame = +2
Query: 185 MAPIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTA 364
+AP+ + I +++GGPGSGKGTQCDKIVAKYG THLS+GDLLR EVKSGS R LTA
Sbjct: 12 LAPLKAAGVPIFFIVGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTA 71
Query: 365 IMERGELVPNEIVLDLLKEAILARAEE-SKGFLIDGYPREKSQGIAFEENIAPVSVIIYF 541
IME G LVP E+VLDL+KEA+L E+ SKGFLIDGYPRE +QG FE I ++++F
Sbjct: 72 IMESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQEAKLVLFF 131
Query: 542 EASSETLTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPDK 688
+ + ETL +RLL RA +SGRADDN +TIK RL TF+ + V+ Y K
Sbjct: 132 DVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESK 180
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 105 bits (253), Expect = 2e-23
Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Frame = +2
Query: 212 SIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAE-VKSGSERAKCLTAIMERGELV 388
++V+VLG PGSGKGT C KI + HLS GDLLRAE + GSE + + ++ G +V
Sbjct: 3 NVVFVLGPPGSGKGTICAKIQENLNYVHLSAGDLLRAERQREGSEFGALIESHIKNGSIV 62
Query: 389 PNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI---APVSVIIYFEASSET 559
P EI LL+ A+ A ++KGFL+DG+PR + + + + A V +++
Sbjct: 63 PVEITCSLLENAMKA-CGDAKGFLVDGFPRNEDNLQGWNKQMDGKALVQFVLFLSCPVSI 121
Query: 560 LTQRLLGRAASSGRADDNEETIKLRLKTF 646
+R L R GR DDNEE++K R++T+
Sbjct: 122 CIERCLNR--GQGRTDDNEESLKKRVETY 148
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 102 bits (244), Expect = 3e-22
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Frame = +2
Query: 212 SIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAE-VKSGSERAKCLTAIMERGELV 388
++V+VLG PGSGKGT C +I G+ HLS GDLLRAE ++GSE + ++ G +V
Sbjct: 3 NVVFVLGPPGSGKGTICTQIHENLGYVHLSAGDLLRAERERAGSEYGALIEGHIKNGSIV 62
Query: 389 PNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI---APVSVIIYFEASSET 559
P EI LL+ A++A ++++ GFLIDG+PR + + + + +++ +
Sbjct: 63 PVEITCALLENAMIA-SKDANGFLIDGFPRNEDNWSGWNKQMGGKVNEQFVLFLSCPVDV 121
Query: 560 LTQRLLGRAASSGRADDNEETIKLRLKTF 646
R L R GR DDN E++K R++T+
Sbjct: 122 CIDRCLHR--GQGRTDDNVESLKKRVETY 148
>L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical
protein C29E4.8 protein.
Length = 251
Score = 100 bits (239), Expect = 1e-21
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 7/145 (4%)
Frame = +2
Query: 191 PIDTSKKSIVWV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAI 367
P +T + I + +G PGSGKGTQ KY HL+TGDLLRAEV SGSE K L A
Sbjct: 19 PTETLARGIRAIFIGPPGSGKGTQAPAFAQKYFSCHLATGDLLRAEVASGSEFGKELKAT 78
Query: 368 MERGELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI----APVSVII 535
M+ G+LV +E+V L+++ L + E GF++DG+PR Q +E + P+ ++
Sbjct: 79 MDAGKLVSDEVVCKLIEQK-LEKPECKYGFILDGFPRTSGQAEKLDEILERRKTPLDTVV 137
Query: 536 YFEASSETLTQRLLGRA--ASSGRA 604
F + + L +R+ GR +SGR+
Sbjct: 138 EFNIADDLLVRRITGRLFHIASGRS 162
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 78.2 bits (184), Expect = 5e-15
Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +2
Query: 215 IVWVLGGPGSGKGTQCDKIVAKY-GFTHLSTGDLLRAEVKS--GSERAKCLTAIMERGEL 385
++ VLG PGS K +I KY GFT LS GD+LR ++ + E ++ M G+
Sbjct: 515 VILVLGAPGSQKNDISRRIAQKYDGFTMLSMGDILRKKINNEKNDEMWDKVSKKMNNGDP 574
Query: 386 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLT 565
+P ++ +L E + +R + G++I+GYP+ Q + E ++ + I + + +
Sbjct: 575 IPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLEHSLQRTDLAILIDCTEQFCL 634
Query: 566 QRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPDK 688
+ + R + R+DD+ + ++ R++ F N +L DK
Sbjct: 635 EVINKRNRENKRSDDDSDAVRSRMEYFKKNTLPMLKTLDDK 675
Score = 66.1 bits (154), Expect = 2e-11
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Frame = +2
Query: 215 IVWVLGGPGSGKGTQCDKI---VAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIME---R 376
I+ +GGPG GK ++ +A G H+ D++R + ++ E R
Sbjct: 171 IILFMGGPGGGKTRHAARVADSLADNGLVHICMPDIIRTALGKYKDKYPEWKEANEHYIR 230
Query: 377 GELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSE 556
GEL+PN++ L LLK A + R ++ GF ++GYPRE Q FE + V++ + +
Sbjct: 231 GELIPNQLALTLLK-AEMGRHPDAMGFFLEGYPREARQVEDFERQVKSVNMALILDYDER 289
Query: 557 TLTQRL 574
TL + +
Sbjct: 290 TLREHM 295
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 78.2 bits (184), Expect = 5e-15
Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +2
Query: 215 IVWVLGGPGSGKGTQCDKIVAKY-GFTHLSTGDLLRAEVKS--GSERAKCLTAIMERGEL 385
++ VLG PGS K +I KY GFT LS GD+LR ++ + E ++ M G+
Sbjct: 515 VILVLGAPGSQKNDISRRIAQKYDGFTMLSMGDILRKKINNEKNDEMWDKVSKKMNNGDP 574
Query: 386 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLT 565
+P ++ +L E + +R + G++I+GYP+ Q + E ++ + I + + +
Sbjct: 575 IPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLEHSLQRTDLAILIDCTEQFCL 634
Query: 566 QRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPDK 688
+ + R + R+DD+ + ++ R++ F N +L DK
Sbjct: 635 EVINKRNRENKRSDDDSDAVRSRMEYFKKNTLPMLKTLDDK 675
Score = 66.1 bits (154), Expect = 2e-11
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Frame = +2
Query: 215 IVWVLGGPGSGKGTQCDKI---VAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIME---R 376
I+ +GGPG GK ++ +A G H+ D++R + ++ E R
Sbjct: 171 IILFMGGPGGGKTRHAARVADSLADNGLVHICMPDIIRTALGKYKDKYPEWKEANEHYIR 230
Query: 377 GELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSE 556
GEL+PN++ L LLK A + R ++ GF ++GYPRE Q FE + V++ + +
Sbjct: 231 GELIPNQLALTLLK-AEMGRHPDAMGFFLEGYPREARQVEDFERQVKSVNMALILDYDER 289
Query: 557 TLTQRL 574
TL + +
Sbjct: 290 TLREHM 295
>Z48585-2|CAA88479.1| 222|Caenorhabditis elegans Hypothetical
protein ZK673.2 protein.
Length = 222
Score = 60.9 bits (141), Expect = 8e-10
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Frame = +2
Query: 218 VWVLGGPGSGKGTQCDKIVAKY---GFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELV 388
V + G GSGKGT +V ++ GF + + GD +R + G+E + + +GE V
Sbjct: 4 VLLSGAAGSGKGTIARMLVREFEPLGFNYFAAGDFIRDHIARGTEFGVRAQSFLNKGEHV 63
Query: 389 PNEIVLDLLKEAILAR-AEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLT 565
P+ I L AILA + ++DGYPR SQ + E AP+++I+ + + L
Sbjct: 64 PDSI----LNGAILAEMLKAGPRVVLDGYPRNMSQ-LKMVEEQAPLNLIVELKVPRKVLI 118
Query: 566 QRLLGRAA--SSGRA 604
RL + +SGRA
Sbjct: 119 DRLSKQLVHPASGRA 133
>Z68342-6|CAD89740.1| 418|Caenorhabditis elegans Hypothetical
protein F38E11.6b protein.
Length = 418
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 212 SIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 316
+IV++ GGP S KG+ +++ + + FT +S D++
Sbjct: 43 AIVFIFGGPASQKGSIIEELTSSFNFTSISVEDIV 77
>Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical
protein F38E11.6a protein.
Length = 416
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 212 SIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 316
+IV++ GGP S KG+ +++ + + FT +S D++
Sbjct: 43 AIVFIFGGPASQKGSIIEELTSSFNFTSISVEDIV 77
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 185 MAPIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLR 319
MA +T ++ + V G PG+GK T ++ K GF + +R
Sbjct: 1 MATPETRRRPNILVTGSPGTGKSTLGQQVAEKLGFVFIEVSKEVR 45
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
protein F35G12.8 protein.
Length = 1549
Score = 29.5 bits (63), Expect = 2.4
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Frame = +2
Query: 188 APIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGF--THLSTGDLLRAEVKS-GSERAKCL 358
A I KS ++G GSGK D ++ +GF + + + + KS G KC
Sbjct: 107 ASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVSNLIHKSAGRNPDKCT 166
Query: 359 TAI-MERGELVPN--EIVLDLLKEAILARA---EESKGFLIDGYPREKSQ 490
I +R +P E+V D E ++R S + IDG P K++
Sbjct: 167 VTIHFQRIVDIPGHYEVVKD--SEFTISRTAFQNNSSSYAIDGRPATKNE 214
>Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
>Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
>Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
>Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 209 KSIVWVLGGPGSGKGTQCDKIVAKYGF-THLSTGDLLRAEVKSGSERAKCLTAIM 370
K++ +LG GSGK D ++ +GF L A + SG C IM
Sbjct: 115 KNLTMILGPNGSGKSNVIDALLFVFGFKAGKIRTKKLSALINSGGNYESCSVTIM 169
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 209 KSIVWVLGGPGSGKGTQCDKIVAKYGF-THLSTGDLLRAEVKSGSERAKCLTAIM 370
K++ +LG GSGK D ++ +GF L A + SG C IM
Sbjct: 115 KNLTMILGPNGSGKSNVIDALLFVFGFKAGKIRTKKLSALINSGGNYESCSVTIM 169
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 219 CGSWEVPDQEREHNATRSSPNTGSL-TSRLETCS----GLKSKAARRGRNALPLLWKEAS 383
C +W PD++ H+ S TG+ T+++ S G S+ RG P + K S
Sbjct: 78 CCNWTFPDKKELHSHNNSMLKTGTPGTAKIIAVSSRRPGSLSQHELRGEERSPRIKKRPS 137
Query: 384 LSLMKSS 404
MK+S
Sbjct: 138 SKAMKTS 144
>AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein.
Length = 957
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
>AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein.
Length = 972
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
>AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein.
Length = 972
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 HRYIEKVNRVGPGRSRIRKGNTMRQDRRQIRVHSPLDWRP 312
H ++ + + S +R G+ R+ RVHSP+D+ P
Sbjct: 262 HDDVDNIFGLSLSESDVRSGSMYRRPDSADRVHSPIDFTP 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,526
Number of Sequences: 27780
Number of extensions: 325509
Number of successful extensions: 1035
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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