Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28i01
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     29   0.92 
06_02_0011 - 10569471-10572245                                         29   0.92 
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234...    27   2.1  
05_03_0467 - 14366969-14367742,14368335-14368754,14370339-143704...    27   3.7  
02_01_0688 + 5131555-5132334                                           27   3.7  
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744...    26   4.9  
03_06_0145 - 31973924-31975837                                         26   6.5  
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917...    25   8.6  
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090...    25   8.6  

>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 287 YLY*QSSGHFLFAGLIFVTTGSSCDVLLYLEYNLHNSAMTP 165
           YL   + G   F G+ F+TTG   +  +  +YNL+  A +P
Sbjct: 229 YLMALAQGVLYFYGMTFITTGRKMERKVADKYNLNYGAKSP 269


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 112 LRCLIGYFAASCRRRKFCSFFHSYILYIFL 23
           L CL+G +AA C R    SF+  +I+ I L
Sbjct: 293 LLCLVGAYAAGCCRDVATSFYVMFIIMIVL 322


>12_02_0706 +
           22319293-22319803,22321625-22321766,22322223-22323451,
           22323471-22323916,22324001-22324510
          Length = 945

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 257 LFAGLIFVTTGSSCDVLLYLEYNLHNSAMTPAPRTRPPMIVSQGVLS 117
           L+A  + +TTG +   LL+ +Y   ++ + PA      M++ QGVLS
Sbjct: 316 LYACGLVITTGLAAWRLLHRDYGDGSNNLRPALDVLYTMVLLQGVLS 362


>05_03_0467 -
           14366969-14367742,14368335-14368754,14370339-14370496,
           14370571-14370664,14371536-14371649,14371794-14371985,
           14372095-14372176,14372280-14372471,14372773-14373371
          Length = 874

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 206 LYLEYNLHNSAMTPAPRTRP 147
           L+L   LHN +  P+PR RP
Sbjct: 11  LHLSLQLHNPSAIPSPRRRP 30


>02_01_0688 + 5131555-5132334
          Length = 259

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 176 AMTPAPRTRPPMIVSQGVLSPSPLF 102
           A  PAP   PP + +  V +P PLF
Sbjct: 26  APAPAPAPAPPPVPAAAVAAPLPLF 50


>07_01_0890 -
           7437901-7439339,7439452-7439657,7439841-7440171,
           7440268-7440405,7440619-7440874,7440963-7441318,
           7441421-7441709
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 146 PMIVSQGVLSPSPLFDWLF 90
           P IV+ GVL  +  F+WLF
Sbjct: 124 PYIVASGVLLTASFFEWLF 142


>03_06_0145 - 31973924-31975837
          Length = 637

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 185 HNSAMTPAPRTRPPMIVSQGVLSPSPL 105
           H S    AP T P ++VS    SP PL
Sbjct: 430 HKSKSGDAPPTPPAVMVSPAATSPPPL 456


>07_03_0398 -
           17690979-17690998,17691034-17691446,17691709-17691764,
           17691922-17692054,17694244-17694403,17694862-17694955,
           17695791-17695928,17696017-17696174,17696729-17696810,
           17697055-17697151,17698703-17698824,17699833-17699910,
           17700437-17700565,17701301-17701531
          Length = 636

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 187 KLYSRYSNTSQEEPVVTKINPAKRKW 264
           K+YSR  +  +E+    +I+ AK KW
Sbjct: 372 KIYSRERDNMEEKAANVEISSAKTKW 397


>06_03_1367 +
           29607008-29607501,29608726-29608906,29609006-29609065,
           29609486-29609649,29609723-29609888,29609889-29609957,
           29610060-29610155,29610345-29610389,29610765-29610835,
           29610996-29611062,29611150-29611200,29611276-29611686
          Length = 624

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 245 LIFVTTGSSCDVLLYLEYNLHNSAMTPAPRTRPPMIVSQGVLSPSPLF 102
           L+++T  S+  +L    Y+       PAPR   P++VS  V    P++
Sbjct: 149 LMWITRISARCILFSFGYHWIRRKGKPAPRELAPIVVSNHVSYIEPIY 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.128    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,563,379
Number of Sequences: 37544
Number of extensions: 130668
Number of successful extensions: 265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)