Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h23
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    30   1.5  
08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874...    28   6.0  

>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 323  VRLFIQLVLNAPK--PIHSHLDGHIETLLKRITPQLR 219
            VR   QLVL AP+  P+HSH+   I TL  R  P LR
Sbjct: 1088 VRFAQQLVLFAPQAVPVHSHVQSLIPTLYSR-QPSLR 1123


>08_02_1055 +
           23986258-23986459,23986734-23986825,23987389-23987412,
           23987932-23988068,23988533-23988692,23988997-23989006,
           23989449-23989726,23990059-23990136
          Length = 326

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = +3

Query: 144 EYLMFSTMVPNWDDTKRLESLRFLTSELWRYSFEERFYVTVQMAMYRFRCVQYELN 311
           E+     MV +WD+ +  +++ F +S + + S  + FY   +  M R+  + + ++
Sbjct: 26  EFFQLLMMVSHWDEDEYSDNITFYSSSIEKISRYKSFYQGQEGKMTRYMGILFAMH 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,276
Number of Sequences: 37544
Number of extensions: 257965
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)