Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h22
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.8  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   5.8  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   5.8  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   7.7  

>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 544 RFNITIAKNTLINVQDKQKKTNKNVLLIINHKQ 642
           R  +  AKN L+NV D  K    +V  ++N KQ
Sbjct: 99  RKELESAKNNLLNVYDSLKMQKASVSSMVNRKQ 131


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 466 LSRHGSGCVIVIKATKTGSIFIYGLIRFNITIAKNTLINVQ 588
           +S+   G V + +   TG  F   +++ +  IAKN +INV+
Sbjct: 595 ISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVINVR 635


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 605 VFFCLSCTFISVF--LAMVMLNRINP 534
           V F +SC F+S+F  L +++L  INP
Sbjct: 387 VCFVVSCIFVSIFDTLTVLLLTWINP 412


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 618 HIFIRFLLFVLYIYQCIFSYGNVKSNQSVNKY*TRF 511
           HIF+ F    LYI+  +     + S + +N+  T F
Sbjct: 296 HIFLLFTFECLYIFSLVIDQETLSSFELINQVPTNF 331


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 346 HHIGLRSTSTTR-NFDGFCLLL 284
           H +GL S++ TR  FD FC+ L
Sbjct: 538 HRVGLGSSTDTRLEFDEFCIFL 559


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 382 LLCSRWRCAIILRILY 429
           LL  RW C I+L++L+
Sbjct: 316 LLADRWSCGILLKVLF 331


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 415 LRILYCRTRS*SLDCLCLSRH 477
           LR++YC  R+ ++ CL  S+H
Sbjct: 14  LRVIYCIDRASAIRCLAKSQH 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,078
Number of Sequences: 5004
Number of extensions: 43704
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)