Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h22
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical...    33   0.25 
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ...    33   0.25 
U28732-6|AAB04903.2|  489|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U28732-5|AAT92075.1|  495|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68760-3|CAA92993.1|  207|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical...    28   7.1  
Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1a protein.
          Length = 1628

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +1

Query: 457 CLCLSRHGSGCVIVIKATKTGSIFIYGLIRFNITIAKNTLINVQDKQKKTNKNVLLI 627
           CL   R G     V++AT   + FI  L RF +  AKN+L  ++ K  +  K +LLI
Sbjct: 827 CLRGFRLGVRAACVLQATLERNAFIQALARFTLLTAKNSLGEMRVKNIEAIKLLLLI 883


>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1a protein.
          Length = 1628

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +1

Query: 457 CLCLSRHGSGCVIVIKATKTGSIFIYGLIRFNITIAKNTLINVQDKQKKTNKNVLLI 627
           CL   R G     V++AT   + FI  L RF +  AKN+L  ++ K  +  K +LLI
Sbjct: 827 CLRGFRLGVRAACVLQATLERNAFIQALARFTLLTAKNSLGEMRVKNIEAIKLLLLI 883


>U28732-6|AAB04903.2|  489|Caenorhabditis elegans Hypothetical
           protein F45E1.7a protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 481 SHAG*GINSPNFSFVSDSREYAK**HNATANTVEISLQNQMQLRSHHIG 335
           SH   G +SP  S  SD+  +    HN+TAN  +   QN  Q++   +G
Sbjct: 350 SHEDVGKSSPKSSSESDTSTFDSRKHNSTANKYKNQPQNTTQIQPPPVG 398


>U28732-5|AAT92075.1|  495|Caenorhabditis elegans Hypothetical
           protein F45E1.7b protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 481 SHAG*GINSPNFSFVSDSREYAK**HNATANTVEISLQNQMQLRSHHIG 335
           SH   G +SP  S  SD+  +    HN+TAN  +   QN  Q++   +G
Sbjct: 356 SHEDVGKSSPKSSSESDTSTFDSRKHNSTANKYKNQPQNTTQIQPPPVG 404


>Z68760-3|CAA92993.1|  207|Caenorhabditis elegans Hypothetical
           protein F36H1.5 protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 352 RSHHIGLRSTSTTRNFDGFCLLLCNYNFRLHFHLF 248
           +  H+  R T+  R   GFC L+C+ N R+ + +F
Sbjct: 31  KKEHVNYRMTAENR---GFCQLICHINVRIGWTIF 62


>AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical
           protein E01A2.8 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 391 NTVEISLQNQMQ-LRSHHIGLRSTSTTRNFDGFCLLLCNYNFRLHFHLFQLCKNHVP 224
           + +E   QN  Q L S  I  +  ST   F+ F  LL   NF+L F + +   NH P
Sbjct: 113 SNIETERQNSSQDLFSKFIFFQIDSTLIVFENFNELLSPSNFKLMFDINKRTYNHRP 169


>Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical
           protein T27E7.3 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 348 RTILVSDRLRQRAILTVSACYFVIIILGCIFIYFNSAKTMCRLQYIFSSYRI 193
           +T+ +   +R   +  V AC  VI  +G I I   S +T+  L+  F+ +RI
Sbjct: 225 KTLYICCIIRDYVLSPVVACVSVIYFIGSISIETFSLETLFSLKSQFTIFRI 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,321
Number of Sequences: 27780
Number of extensions: 246285
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)