Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h20
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch...   101   9e-23
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    27   1.8  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   3.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.5  

>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 149

 Score =  101 bits (242), Expect = 9e-23
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
 Frame = +1

Query: 37  KILSIKLFDDESSKRWKKTVVDKQFEILCVSQFTLY-NTWKGNKPDFHNAMPGDQSKEFY 213
           KIL +KLFD+ + + WK T+ D Q EILCVSQFTL+    KG KPDFH +M G ++ E Y
Sbjct: 48  KILKLKLFDN-AEQPWKSTIADIQGEILCVSQFTLHARVNKGAKPDFHRSMKGPEAIELY 106

Query: 214 EKFLQMLKDAYVSDKIKDGLFGAYMQVCIQNDGPVT 321
           E+ ++ L ++  SDKIK G+FGA M V + N+GPVT
Sbjct: 107 EQVVKTLGESLGSDKIKKGVFGAMMNVQLVNNGPVT 142


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 98  LINNLKYYVSVNSHYIILGKVTNQTSTMQCLVTN 199
           +IN    Y S N+ YI+LGKVT +    Q    N
Sbjct: 56  IINEPIVYKSSNNAYIVLGKVTVEDMAAQARAFN 89


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 319 SQVHRSVCKLACRLQINHLLFYQTHMRLLTSAEISRK 209
           + V ++   L+ + ++NH    +T+MRLL S ++ +K
Sbjct: 239 ADVDKTSGSLSEKSEVNHASLKKTYMRLLNSGKMQKK 275


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 281 APNKPSFILSDTYASFNICRN 219
           +P KPSF L  +++  ++CR+
Sbjct: 288 SPQKPSFALDSSFSHLDVCRH 308


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 122 VSVNSHYIILGKVTNQTSTMQCLVTNLKNFTRNFC 226
           +++ S  I  GK  N+ STM+ LV +      N+C
Sbjct: 395 INIVSSCIFDGKPQNRISTMRILVAHTNERYANYC 429


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 343  CQGIQFQKSQVHRSVCKLACRLQINHLLFYQTHMR 239
            C     Q+SQ++    + +C L I    +Y  H+R
Sbjct: 1939 CDSDGIQRSQIYHMSPEESCSLPIETAYYYSIHIR 1973


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,729
Number of Sequences: 5004
Number of extensions: 50494
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)