Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h20
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0993 - 7857108-7857168,7857246-7857319,7857400-7857425,785...   118   5e-27
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    30   1.9  
07_03_0509 - 18903315-18903443,18903547-18903904,18904012-189040...    28   7.5  

>01_01_0993 -
           7857108-7857168,7857246-7857319,7857400-7857425,
           7857851-7857991,7858097-7858127,7858251-7858317,
           7858685-7858776,7858871-7858912
          Length = 177

 Score =  118 bits (283), Expect = 5e-27
 Identities = 52/112 (46%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
 Frame = +1

Query: 34  RKILSIKLFDDESS-KRWKKTVVDKQFEILCVSQFTLYNTWKGNKPDFHNAMPGDQSKEF 210
           RK+L+++LF +E + K W ++V+ ++FE+L VSQFTLY   KGNKPDFH AMP  ++K F
Sbjct: 47  RKVLNMRLFPNEKTEKAWDQSVLQRKFEVLLVSQFTLYGILKGNKPDFHVAMPPAKAKPF 106

Query: 211 YEKFLQMLKDAYVSDKIKDGLFGAYMQVCIQNDGPVTFEIESLD-KDPSKSN 363
           Y   ++  + +Y +D +KDG+FGA M+V + NDGPVT +++S   ++P++S+
Sbjct: 107 YASLVEKFQKSYSADAVKDGIFGAMMKVSLVNDGPVTMQVDSSSLQNPAQSS 158


>07_03_0572 -
           19604643-19604745,19604947-19605629,19605786-19606284,
           19606370-19606878,19607110-19607148,19607347-19607411,
           19609081-19609201,19610229-19610315,19611096-19611179,
           19611925-19612175,19612869-19612962,19613043-19613284,
           19614187-19614505
          Length = 1031

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 160 NKPDFHNAMPGDQSKEFYEKFLQMLKDAYVSD 255
           N PDF N MPGD+  E    +  +  DA + D
Sbjct: 125 NPPDFQNFMPGDRCPEMSTSYNWVETDAQLED 156


>07_03_0509 -
           18903315-18903443,18903547-18903904,18904012-18904068,
           18904151-18904237,18904337-18904875
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 536 IFFSLPIRWYTKGLF 580
           IFF+  ++WYTKGL+
Sbjct: 336 IFFAFKLKWYTKGLW 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,178
Number of Sequences: 37544
Number of extensions: 277063
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)