Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h17
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279...    27   2.8  
06_01_0635 + 4623223-4623380,4623529-4623724,4624379-4624894,462...    26   3.7  
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490...    25   6.5  

>12_02_0712 +
           22426945-22426981,22427517-22427623,22427707-22427955,
           22429309-22429937,22430013-22430192,22430267-22430555,
           22431183-22431247,22431379-22431471,22431811-22431897,
           22431971-22432071,22432571-22432692
          Length = 652

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -1

Query: 221 DTLDISLLTYDQRFRYLYCQNYYKFY---FCTR 132
           DTLD +L+ Y +R ++  C N ++ +   +C+R
Sbjct: 434 DTLDKALVKYKKRIQHAPCSNTFRVWCHPYCSR 466


>06_01_0635 +
           4623223-4623380,4623529-4623724,4624379-4624894,
           4626212-4626276,4626387-4626453
          Length = 333

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 214 WTFHYSLMTNVSDISTVKIIIN 149
           W +H SL+  +SDIS   I+IN
Sbjct: 312 WYYHESLLLQLSDISCHFILIN 333


>01_01_0646 +
           4904790-4904996,4905437-4905483,4905623-4905662,
           4905770-4905970,4906260-4906472,4906561-4906629,
           4906711-4906840,4906934-4906974,4907063-4907287,
           4907575-4907745,4908713-4908778
          Length = 469

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 187 NVSDISTVKIIINSTFVRGSHKER 116
           N  D  T KI+++ T  RG+H  R
Sbjct: 90  NTDDTVTQKIVVHKTSARGTHFRR 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,149,900
Number of Sequences: 37544
Number of extensions: 73739
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)