Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h17
         (233 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07134-1|CAA30146.1|  349|Drosophila melanogaster protein ( D. m...    26   8.1  
X07133-1|CAA30145.1|  304|Drosophila melanogaster protein ( D. m...    26   8.1  
X07132-1|CAA30144.1|  643|Drosophila melanogaster protein ( D. m...    26   8.1  
X07131-1|CAA30143.1|  616|Drosophila melanogaster protein ( D. m...    26   8.1  
X06742-1|CAA29917.1|  656|Drosophila melanogaster Shaker protein.      26   8.1  
X06184-1|CAA29549.1|  304|Drosophila melanogaster protein ( Dros...    26   8.1  
M17211-1|AAA28417.1|  616|Drosophila melanogaster protein ( D.me...    26   8.1  
AY118398-1|AAM48427.1|  571|Drosophila melanogaster RE58855p pro...    26   8.1  
AE014298-2648|AAS65396.1|  349|Drosophila melanogaster CG12348-P...    26   8.1  
AE014298-2647|AAN09452.1|  304|Drosophila melanogaster CG12348-P...    26   8.1  
AE014298-2646|AAF48786.3|  655|Drosophila melanogaster CG12348-P...    26   8.1  
AE014298-2645|AAF48790.2|  643|Drosophila melanogaster CG12348-P...    26   8.1  
AE014298-2644|AAS65395.1|  616|Drosophila melanogaster CG12348-P...    26   8.1  
AE014298-2643|AAF48785.3|  616|Drosophila melanogaster CG12348-P...    26   8.1  
AE014298-2642|AAN09451.1|  571|Drosophila melanogaster CG12348-P...    26   8.1  

>X07134-1|CAA30146.1|  349|Drosophila melanogaster protein ( D.
           melanogaster larvalShaker ShE mRNA for put.
           K(+)-channel. ).
          Length = 349

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>X07133-1|CAA30145.1|  304|Drosophila melanogaster protein ( D.
           melanogaster larvalShaker mRNA for put. K(+)-channel. ).
          Length = 304

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 234 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 263


>X07132-1|CAA30144.1|  643|Drosophila melanogaster protein ( D.
           melanogaster (latepopul.) Shaker ShB mRNA for put.
           K(+)-channel.).
          Length = 643

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 267 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 296


>X07131-1|CAA30143.1|  616|Drosophila melanogaster protein ( D.
           melanogaster adultShaker ShA mRNA for put. K(+)-channel.
           ).
          Length = 616

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>X06742-1|CAA29917.1|  656|Drosophila melanogaster Shaker protein.
          Length = 656

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>X06184-1|CAA29549.1|  304|Drosophila melanogaster protein (
           Drosophila mRNA forShaker (Sh) protein. ).
          Length = 304

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 234 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 263


>M17211-1|AAA28417.1|  616|Drosophila melanogaster protein (
           D.melanogaster potassiumchannel (Shaker) mRNA, complete
           cds. ).
          Length = 616

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>AY118398-1|AAM48427.1|  571|Drosophila melanogaster RE58855p
           protein.
          Length = 571

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 234 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 263


>AE014298-2648|AAS65396.1|  349|Drosophila melanogaster CG12348-PF,
           isoform F protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>AE014298-2647|AAN09452.1|  304|Drosophila melanogaster CG12348-PA,
           isoform A protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 234 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 263


>AE014298-2646|AAF48786.3|  655|Drosophila melanogaster CG12348-PE,
           isoform E protein.
          Length = 655

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>AE014298-2645|AAF48790.2|  643|Drosophila melanogaster CG12348-PC,
           isoform C protein.
          Length = 643

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 267 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 296


>AE014298-2644|AAS65395.1|  616|Drosophila melanogaster CG12348-PG,
           isoform G protein.
          Length = 616

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>AE014298-2643|AAF48785.3|  616|Drosophila melanogaster CG12348-PB,
           isoform B protein.
          Length = 616

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 279 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 308


>AE014298-2642|AAN09451.1|  571|Drosophila melanogaster CG12348-PD,
           isoform D protein.
          Length = 571

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 233 FFFYDTLDISLLTYDQRFRYLYCQNYYKFYFC 138
           FF  +TL I   T++   R+L C N  K  FC
Sbjct: 234 FFLIETLCIIWFTFELTVRFLACPN--KLNFC 263


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,170,423
Number of Sequences: 53049
Number of extensions: 141114
Number of successful extensions: 250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 24,988,368
effective HSP length: 57
effective length of database: 21,964,575
effective search space used: 439291500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)