Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h17
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical ...    27   1.8  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    26   3.1  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    26   3.1  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    25   5.4  

>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 199 SLMTNVSDISTVKIIINSTFVRGSHKERKRY 107
           SL+ + S+ISTV   +NS  +R SH++ KR+
Sbjct: 319 SLLKSRSNISTVTFHLNSNLLR-SHQQYKRF 348


>AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical
           protein F09G2.8b protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 208 FHYSLMTNVSDISTVKIIINSTFVRGSHKER 116
           F YSL  N S+I    I+IN   +R +H  R
Sbjct: 38  FQYSLFQNSSEIPMTTILINDRPMRHTHDGR 68


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 167 CQNYYKFYFCTRLS*REETLFIKLFCPQ 84
           CQ +Y F  C+ L   E  L+ K FCP+
Sbjct: 247 CQTWYHF-LCSGLEQFEYYLYEKFFCPK 273


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 167 CQNYYKFYFCTRLS*REETLFIKLFCPQ 84
           CQ +Y F  C+ L   E  L+ K FCP+
Sbjct: 260 CQTWYHF-LCSGLEQFEYYLYEKFFCPK 286


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +1

Query: 1   VGRFYVVNAFFMSKFFVMS*YLTNFRAYCGQNSFINNVSSLYESRVQK*N 150
           +  FY+     M      S     F+ Y G N++    +  Y S +QK N
Sbjct: 180 ISNFYIKWQLLMEPAIDYSAQYEQFKNYIGSNAYYQKCAYFYGSSMQKGN 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,144,773
Number of Sequences: 27780
Number of extensions: 87388
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)