Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h17
         (233 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    26   0.070
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   0.21 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   0.21 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   0.21 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   4.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   8.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   8.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   8.0  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 0.070
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 74  KFVKYYDITKNLDIKN 27
           K +K Y +TKNL+IKN
Sbjct: 91  KNIKLYGLTKNLEIKN 106


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 191 DQRFRYLYCQNYYKFYF 141
           +  ++ LYC NY K Y+
Sbjct: 93  NNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 191 DQRFRYLYCQNYYKFYF 141
           +  ++ LYC NY K Y+
Sbjct: 93  NNNYKKLYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 191 DQRFRYLYCQNYYKFYF 141
           +  ++ LYC NY K Y+
Sbjct: 93  NNNYKKLYCNNYRKLYY 109


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like
          GPCR protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 59 YDITKNLDIKN 27
          YD  KN D+KN
Sbjct: 9  YDFWKNWDLKN 19


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 24  CVFYVQILCDVVIFNKFS 77
           C F++ I   + I+N F+
Sbjct: 93  CDFFMMIKTPIFIYNSFN 110


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 FPLFMRAAYKSRIYNNFDSR 172
           F LF+  +  S  YN ++SR
Sbjct: 616 FQLFLYVSPVSSEYNQYNSR 635


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 FPLFMRAAYKSRIYNNFDSR 172
           F LF+  +  S  YN ++SR
Sbjct: 616 FQLFLYVSPVSSEYNQYNSR 635


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 59  YDITKNLDIK 30
           YD TK +DIK
Sbjct: 573 YDTTKPIDIK 582


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 92 CPQ*ARKFVKYYDITKNLDIKN 27
          CP   R F  YY + ++   K+
Sbjct: 8  CPYCRRNFSCYYSLKRHFQDKH 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,267
Number of Sequences: 438
Number of extensions: 1151
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)