Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h16
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200...   113   2e-25
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737...   111   4e-25
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458...    31   0.84 
01_06_0768 - 31829753-31829851,31830454-31830593,31830729-318308...    31   0.84 
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    29   2.6  

>10_08_0301 -
           16619499-16619675,16619770-16619853,16619932-16620083,
           16620296-16620391,16620473-16620627,16620791-16620856,
           16620993-16621062,16621175-16621305,16622121-16622307,
           16622410-16622485
          Length = 397

 Score =  113 bits (271), Expect = 2e-25
 Identities = 46/100 (46%), Positives = 68/100 (68%)
 Frame = +3

Query: 381 PFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVAN 560
           P+F+ G V+KGFGRGSK LG PTAN P E    +      GVY+GWA + T  +++MV +
Sbjct: 238 PWFIGGPVIKGFGRGSKVLGIPTANLPAENFSDVLSEHTSGVYFGWAGLSTRGIFKMVMS 297

Query: 561 IGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLR 680
           IGW P++ N E ++E  ++H+F  DFYG  L++ ++GY+R
Sbjct: 298 IGWNPYFDNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIR 337


>10_04_0002 -
           7372425-7372601,7372697-7372780,7372859-7373010,
           7373229-7373324,7373406-7373554,7373723-7373788,
           7373925-7373994,7374106-7374236,7376464-7376471,
           7377946-7378002
          Length = 329

 Score =  111 bits (268), Expect = 4e-25
 Identities = 46/100 (46%), Positives = 67/100 (67%)
 Frame = +3

Query: 381 PFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVAN 560
           P+F+ G V+KGFGRGSK LG PTAN P E    +       VY+GWA + T  +Y+MV +
Sbjct: 170 PWFIGGSVIKGFGRGSKVLGIPTANLPAENFSDVLSEHTSRVYFGWAGLSTRGIYKMVMS 229

Query: 561 IGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLR 680
           IGW P++ N E ++E  ++H+F  DFYG  L++ ++GY+R
Sbjct: 230 IGWNPYFDNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIR 269


>11_01_0574 +
           4582098-4582331,4582450-4582492,4582683-4582757,
           4584344-4584465,4584547-4584654,4585975-4586119,
           4586786-4586869,4586997-4587345,4587527-4587666,
           4587784-4588037,4588409-4588576,4588686-4588976,
           4589329-4589538,4589778-4589860,4590288-4590414,
           4593624-4595516,4596274-4596395,4596487-4596628,
           4596719-4596940,4597489-4597563,4598351-4598452,
           4598616-4598819
          Length = 1730

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 558 NIGWCPFYQNKEMSVETHIMHNFQG---DFYGSNLKIALIGY 674
           +IG   F + KE+ V++H+  + +    D Y SN +I+L+G+
Sbjct: 339 DIGAPSFQETKELQVDSHVAEDSEAEDDDLYLSNCRISLVGF 380


>01_06_0768 -
           31829753-31829851,31830454-31830593,31830729-31830818,
           31830905-31831059,31831598-31831663,31831862-31831931,
           31832299-31832429,31832516-31832702,31832828-31832894
          Length = 334

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 501 GVYYGWAQVDTGPVYEMVANIGW 569
           G+++GWA+ + G V   V +IGW
Sbjct: 269 GIFFGWAKPEAGGVSRSVISIGW 291


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 371 ISSAFFP*RRGSQGFW-KRF*GTRMPNS*LSFGSCKI--FTKRFGARCLLWMGS 523
           I     P  + ++G W  +F  T++P   L F S        RFG  CL+W+ S
Sbjct: 778 IKHFMLPAAQEAEGIWMNKFGFTKIPQEQLDFWSVSWVGIIARFGRACLMWLSS 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,704
Number of Sequences: 37544
Number of extensions: 308583
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)