Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h15
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   3.1  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    24   3.1  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    23   4.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    23   4.1  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    23   5.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   7.1  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    23   7.1  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    23   7.1  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  LLMWIIR*YS-CLYRIVIHSQHAEINSQLHNPCS 121
           LL+ + + YS C+Y +   + H ++ S L + CS
Sbjct: 840 LLVLLSQKYSTCIYDVTDENSHLKLISSLQDECS 873


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 5   FFMCVVLLMWIIR*YSCLY 61
           FF  +V++ W I  YSC +
Sbjct: 89  FFPAIVIITWAILFYSCRF 107


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 96  ILNYITHALDLGSNDNSLIRAEPERAASI 182
           +++   H+LD+GS D + I  + + AA++
Sbjct: 203 LMSRTIHSLDIGSTDITCISGDQKVAAAL 231


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 59  YRIVIHSQHAEINSQLHNPCSRS 127
           Y I++  QH +++ +L NPC+++
Sbjct: 394 YEIML--QHLKVSMELSNPCAKT 414


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 87  ACWLWITI 64
           ACWLWI I
Sbjct: 168 ACWLWIVI 175


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 47  YSCLYRIVIHSQH 85
           Y  LYR+V+H +H
Sbjct: 897 YGKLYRVVLHPEH 909


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 99  ELISACWLWITIRYKQEYHL 40
           +L++  W W+ +    +YHL
Sbjct: 457 DLVTKIWKWLLVISVDQYHL 476


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 96  LISACWLWITIRYKQEYH 43
           +ISA  LWIT     +YH
Sbjct: 148 MISATALWITGNMNDDYH 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,046
Number of Sequences: 5004
Number of extensions: 14139
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)