Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h13
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    30   0.37 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    28   1.5  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   3.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.6  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   6.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   8.0  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 703 DLRRRADTKSEEVRKHCESTEVSFFRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 527
           +L  +A + S +V++  +   V  FRN +KG    P+ G      R +  KKFL R  D
Sbjct: 209 ELLNKASSGSFQVKRRWDEDVV--FRNTHKGVDDTPRPGFVNDMLRSEFHKKFLARFVD 265


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 697 RRRADTK--SEEVRKHCESTEVSFFRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 527
           R R+D +  S + R+H   +    +RND   +    +  ND  R RD+ D  + ++ YD
Sbjct: 185 RERSDNEQHSSDKREHSRRS----YRNDRNNW--RERTHNDRYRHRDKYDSGYFKKHYD 237


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 157 CEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 261
           C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 64  CGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -1

Query: 703 DLRRRADTKSEEV--RKHCESTEVSFFRNDNKGYPVHPQNGNDEPRRRDQLDKK--FLRR 536
           DL+   + K E+   R+H  S   +   ++NK +   P +G+ +PRR   L K+  ++R+
Sbjct: 16  DLKSENEAKEEKPIGRRHTMSPVPA--TSENKYFGKSPLSGSRKPRRSRSLHKERSYMRK 73

Query: 535 AYD 527
            +D
Sbjct: 74  FFD 76


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 625 NDNKGYPVHPQNGNDEPRRRDQL 557
           N NK      +NGNDE R  D L
Sbjct: 419 NGNKSEQEEKENGNDETRSNDSL 441


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 645 QRFLSFVMITKVTLFILRMVTMNLVVGISSIRSFYEGLTTPTDSRCHL 502
           Q+FL F+  T +TLFIL  +T     G++   S +  + TP    C +
Sbjct: 724 QQFLVFLTFTGMTLFILYQLT--FPYGVAKDNSSF--IDTPLPHSCEM 767


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 562 DPYDEVHRYHSEDEQGNLCYH-YERKKPLSTHNACAPPHSSCQLCAS 699
           D +  + +   EDE+GNL +H  E  K  +     +PP S  +  AS
Sbjct: 251 DEFPMIEKLLREDEEGNLWFHASEDAKKFAEVYGHSPPASPSRTPAS 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,520
Number of Sequences: 5004
Number of extensions: 52776
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)