Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h10
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   3.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   5.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.7  

>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 257 WNKIAFNSSTPRNIRNEKKLWTHA--IYNPEYRKKIPNCPSMMSRQPRFPYESYTKF 421
           WN  + ++S   +  + +    H+  + + +YRK++P+ PSM SR    P    ++F
Sbjct: 396 WNTSSRSNSAINSKSHSQTGSEHSTPLLDTKYRKRLPHSPSMPSRVEFLPALESSQF 452


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +2

Query: 209 LLDPGAYQISD-TDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYR-KKIPNCPSMMS 382
           LL+P  Y  ++  +  +W    ++S T   + +  K W     NP Y+  K+   P+  +
Sbjct: 27  LLNPSGYHRAEKVENNEWTFARYDSYTGVELVDLDKRWDILSLNPNYKLPKLTELPAEAT 86

Query: 383 RQPR 394
              R
Sbjct: 87  NSTR 90


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 197 KYVTLLDPGAYQISDTDTKKWNKIAFNS 280
           +YV +L+PGA  ++D++T  + K A ++
Sbjct: 61  RYVDMLNPGATFVNDSETFNFYKNALSA 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,732
Number of Sequences: 5004
Number of extensions: 69339
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)