Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h10
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0485 - 29415423-29415509,29416512-29416633,29417353-294173...    33   0.16 
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397...    31   1.1  
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745...    29   3.4  
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964...    29   3.4  
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310...    29   4.5  
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469...    28   6.0  

>02_05_0485 -
           29415423-29415509,29416512-29416633,29417353-29417374,
           29419603-29419866
          Length = 164

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 655 GSFSIS*YPGPGLWSIEYFKRGEVHLLHFHPCGL*CEAFKYTFWNFPLAFYT 500
           G FS   +  P  WS+   + G V  +HF      C AF +  W+   A+ T
Sbjct: 106 GRFSEKTFQYPHTWSLNSVRGGNVRFVHFWTVQTVCAAFGWNIWDLCHAYKT 157


>12_02_0912 -
           24238659-24238897,24239353-24239462,24239548-24239741,
           24239839-24239907,24240096-24240282,24240683-24240969,
           24241593-24241880
          Length = 457

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 518 SLGILHCRPILFSLNKYRHYLLRSCKETLLPNQIWYSFHMENV 390
           S+ +  C+ + +S+  + + L+ SC   ++ N  W   H+EN+
Sbjct: 192 SIWLSRCKILYYSIFSWLYGLVGSCAHLVMVNSSWTRSHIENI 234


>02_05_1336 +
           35773629-35773856,35773931-35774085,35774217-35774549,
           35774615-35774927,35776992-35777168,35777281-35777397,
           35777532-35777698,35777800-35778024,35778127-35778448,
           35778542-35778786,35778993-35779131,35779212-35779304,
           35779509-35779577
          Length = 860

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 299 RNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYES 409
           R  K+ + H  YN ++RK   N P+ +  QP  P ES
Sbjct: 789 RQAKQHYLHMFYNLQFRKLAKNVPT-LGEQPAQPTES 824


>01_01_1198 -
           9643469-9643585,9643740-9643805,9643905-9644489,
           9645159-9645994,9646597-9646783,9647572-9647737,
           9648431-9648520,9649122-9649184,9649277-9649413,
           9649835-9650349,9651130-9651231,9651581-9651602
          Length = 961

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 549 HYNPQ-GWKWSKWTSPRLKYSIDQSPGP 629
           H++PQ GW+W +  +P    +I  +PGP
Sbjct: 801 HFSPQDGWEWVEHGTPHRDVAIVGAPGP 828


>06_03_0766 -
           24425486-24426245,24430766-24430855,24430951-24431070,
           24431568-24431746,24432046-24432231,24432454-24432547,
           24432679-24432743,24433652-24433987
          Length = 609

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 230 QISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIP 361
           Q+SD++       +  +  P  + NE+++W + I NP ++   P
Sbjct: 300 QLSDSEVLLQCSTSPAAEPPHFVENERRIWRYLIENPYWQDTFP 343


>12_02_0725 -
           22545423-22546251,22546352-22546547,22546791-22546973,
           22547076-22547275,22548030-22548133
          Length = 503

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +3

Query: 156 KWPSTWKAGFLRPQNT-LHFWXXXXXXXXXXXXXNGTKLHLIHLLREIFAMKRNYGRTPF 332
           K P  W   F R   T L++W             +    + +HL R    +++N  R   
Sbjct: 278 KRPEGWAYRFRRTNTTILYYWSATLCDLEPLRRSDQATGYAMHLDRPPAFLQKNLHRFHV 337

Query: 333 IILNTG 350
           IILNTG
Sbjct: 338 IILNTG 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,083,082
Number of Sequences: 37544
Number of extensions: 386662
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)