Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h09
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522...    30   0.65 
01_03_0108 - 12628711-12629178                                         29   2.0  
07_01_0266 + 1977961-1978120,1979547-1979680,1979813-1979911,198...    28   2.6  
02_05_0979 + 33268294-33269595                                         28   2.6  
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836...    27   4.6  
04_03_0314 - 14238620-14240128                                         27   4.6  
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151...    27   6.0  
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948     27   6.0  
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334...    27   8.0  

>01_03_0175 +
           13450869-13451013,13451293-13451372,13451417-13452240,
           13452287-13452638
          Length = 466

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 216 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 317
           LW  EHF L  G +   PHR    + IG DS+ T
Sbjct: 67  LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100


>01_03_0108 - 12628711-12629178
          Length = 155

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 378 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 247
           KHK+V ++++   K+    T     LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNAECGAGTFMANH 136


>07_01_0266 +
           1977961-1978120,1979547-1979680,1979813-1979911,
           1980257-1980414,1981930-1982018,1982678-1982769,
           1983658-1983706,1983953-1983966
          Length = 264

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 110 NDNDCDGTLCTVQIENETKLACRFT 36
           +DN C G L T    N +K+ C FT
Sbjct: 239 DDNTCQGELVTEYTNNGSKITCGFT 263


>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 274 RWGNLPFLPPSKEKCSDRHNRHRA*C*SISSGCVAALRIRILGHRKMAIYLWQRKTTMIV 95
           +W +L   PP +E  + RH  H       S  C   + ++I GH     YLW   T  I+
Sbjct: 94  QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHIL 151


>07_01_0991 -
           8358309-8358338,8359115-8359393,8359964-8360092,
           8360317-8360598,8361400-8361525,8363490-8363870
          Length = 408

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 234 NVPTATTAIAPSAKALAADVL 172
           ++PT TTA +P+ KAL  D+L
Sbjct: 25  HLPTTTTAASPALKALGEDLL 45


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 249 HQVKRNVPTATTAIAPSAKALAADV 175
           H +  N+ T   A+ P+A+ALAAD+
Sbjct: 145 HPLSPNLSTLAVALTPAAEALAADL 169


>12_02_0037 -
           12613686-12614318,12614792-12614878,12614985-12615176,
           12617246-12617371,12617479-12617565,12617994-12618458,
           12618868-12618947,12619739-12619751
          Length = 560

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 335 YFSAALCSATIFADSRLELRAVGEPSFL 252
           YF A LC  T+  +S + + AV  P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431


>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
          Length = 712

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 283 SSVRWGNLPFLPPSKEKCSDRHNRHRA 203
           S +RW    FLPPS +  SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524


>06_01_0471 -
           3341839-3341881,3341987-3342080,3344724-3344914,
           3345025-3345248
          Length = 183

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 190 CFSTRRDGGCGG 225
           C   RRDGGCGG
Sbjct: 87  CLHRRRDGGCGG 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,650,421
Number of Sequences: 37544
Number of extensions: 231092
Number of successful extensions: 611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)