Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h05
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    30   1.5  
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    29   2.5  
02_05_0266 + 27280592-27281668                                         29   3.3  
08_02_0088 - 12224160-12224173,12224185-12224593,12224657-12226099     29   4.4  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     29   4.4  

>04_04_1405 -
           33305948-33309676,33309749-33310468,33310533-33311439,
           33334405-33334484
          Length = 1811

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 DRYRRQRQREAGSRGHINSVSHIDRAARVLFPAS 494
           DR R++R   +G  GH+ +V  + RA R   PAS
Sbjct: 228 DRRRKKRSVHSGDEGHVLAVEGVPRATRKGRPAS 261


>11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,
            5323968-5324084,5324200-5324268,5324394-5324488,
            5325183-5325521,5327043-5327084,5327814-5327907,
            5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
 Frame = +3

Query: 231  TNNLSMPS-----QSSNPTTSDNLETEQPVAVRLTMERTTQTETRVPRWRQLLYC---LA 386
            +NN  MP+     Q S+PTTS NL   QP A R       ++++ V R  Q L     + 
Sbjct: 821  SNNNMMPAPQSTNQLSSPTTSSNLPPMQPPATRPQEPEPNESQSSVQRILQDLMMSPQMN 880

Query: 387  GDDRYRRQRQREAGSRGHINSVS 455
            G  +     +R  G    +N V+
Sbjct: 881  GIGQLGNDMKRPNGLTSSVNGVN 903


>02_05_0266 + 27280592-27281668
          Length = 358

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 381 LAGDDRYRRQRQREAGSRGHINSVSHIDRAARVLFPASFALLNLFYWMIYAFSSDDFAWS 560
           L  +   RR+R+  A   G   ++   D AA +L P + A+  L     +   +DD AW 
Sbjct: 82  LTAEAHRRRRRRLYASPHGWTLAIDPTDLAASLLHPFTGAVCALPPLPAFFAETDDLAWD 141

Query: 561 DNP 569
            +P
Sbjct: 142 WSP 144


>08_02_0088 - 12224160-12224173,12224185-12224593,12224657-12226099
          Length = 621

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 393 DRYRRQRQREAGSRGHINSVSHIDRAARVLFPAS 494
           DR R++R   +   GH+ +V  + RA R   PAS
Sbjct: 116 DRRRKKRSAHSDDEGHVLAVEGVSRATRKGRPAS 149


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 393 DRYRRQRQREAGSRGHINSVSHIDRAARVLFPAS 494
           DR R++R   +G  GH+ +V    RA R   PAS
Sbjct: 55  DRRRKKRSVHSGDEGHVLAVEGAPRATRKGRPAS 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,227
Number of Sequences: 37544
Number of extensions: 286982
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)