Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h04
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    31   0.15 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    28   1.1  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.5  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   9.9  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    25   9.9  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 311 DCNRCNETNKSVVSVS*CLTAGRLVVVTYDCLPIKMNSRSSVNETNLVNYSADLSTLNQL 490
           +C RC++  K ++  +         +   DC  ++  SRSS    +  N+  D+ T+   
Sbjct: 100 ECFRCHDCRKQIIDSN--FKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVDV-TIKPT 156

Query: 491 DTKESLLS 514
           +TK S+ S
Sbjct: 157 ETKSSVES 164


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 425 RSSVNETNLVNYSADLSTLNQLDTKESLLSFPFDHIYACHSESADRRQTLT 577
           RS+     +V  +   S +  +  K ++  FPF  IYAC SE   +  ++T
Sbjct: 578 RSNETMCGMVGIAIVASIVMHMVQKFNIRRFPFKRIYACLSERRKKELSVT 628


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 148 NQLLPKYHASFIILHVRENVRIEVLEHVESSFY*QCNAVDYCNYIY 285
           N LL KY+A+     +RE +R+ +      + Y Q N +D   Y+Y
Sbjct: 650 NALLAKYNAALEASKLREGLRLAMEISARGNQYLQDNRIDNKCYLY 695


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 66  LEIISKLDHLDYKCLHTESI 125
           L+++SKL +  ++CLH +S+
Sbjct: 452 LQMVSKLSNTYFRCLHDKSV 471


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 437 NETNL-VNYSADLSTLNQLDTKESLLSFP 520
           N T+L V Y ADLSTL+Q     SL   P
Sbjct: 391 NNTSLEVEYGADLSTLDQGSAFPSLAKNP 419


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 63  SLEIISKLDHLDYKCLHTESIMIAIFGDEP 152
           +LEIIS  +H  Y   H E +M+A+ GD+P
Sbjct: 134 ALEIISA-EH-KYTA-HLEQLMVALLGDDP 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,501
Number of Sequences: 5004
Number of extensions: 49072
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)