Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h04
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072...    29   3.4  
07_03_1259 + 25255775-25255780,25255880-25255967,25256142-252567...    29   3.4  
05_06_0264 + 26756337-26756411,26756494-26756594,26757196-267573...    28   7.8  

>08_02_1264 +
           25706009-25706148,25706613-25706716,25707108-25707284,
           25707775-25709708,25709781-25709867,25710058-25710091,
           25710293-25710381,25710522-25710674
          Length = 905

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +2

Query: 419 NSRSSVNETNLVNYSADLSTLNQLDTKESLLSFPFDHIYACHS-ESADRRQTLTLDKEVE 595
           ++R+SV    L   S DL   N+L  K     FP   ++  H   SA+  +     + V 
Sbjct: 523 DTRNSVRRCLLNTLSDDLDCSNELAGKTQEDEFPIISVHREHPLSSAEPSKLKAAGENVT 582

Query: 596 ISTHCVVS---EEKDLVVGSNTEVTQ 664
           +S  CV      +K +V  +N   TQ
Sbjct: 583 VSASCVAKLSPLKKSVVEPANENATQ 608


>07_03_1259 +
           25255775-25255780,25255880-25255967,25256142-25256728,
           25257172-25257362,25257531-25257594,25257949-25257984
          Length = 323

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 503 SLLSFPFDHIYACHSESADRRQTLTLDKEVEISTHCVVSEEKDLVVGSN 649
           S L  P D    C S     R+    D E    T  ++S+ +DL+V +N
Sbjct: 135 SQLLLPLDRFLNCPSSLEVDRRVAAADGEFSPDTQIILSKARDLLVNTN 183


>05_06_0264 +
           26756337-26756411,26756494-26756594,26757196-26757369,
           26757449-26757548,26757869-26758006,26758104-26758185,
           26758631-26758680,26758748-26758873
          Length = 281

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +2

Query: 410 IKMNSRSSVNETNLVNY-SADLSTLN-QLDTKESLLSFPFDHIYACHSESADRRQTLTLD 583
           +++N+     +T LV   +A++S +    D K  LL+   +HIY   +   D+R   +L+
Sbjct: 144 LRVNACQGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFSLE 203

Query: 584 KEVEISTHCVVSEEKDLVVGSNTEVT 661
               ++T    + +   V+  + + T
Sbjct: 204 SSPNVATEAAFTPDGQYVISGSGDGT 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,814
Number of Sequences: 37544
Number of extensions: 268151
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)