Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h03
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    29   0.52 
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   2.1  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    26   2.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   2.8  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   6.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.5  

>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 362 SPLKSVATSDGDSKVLKVTITTRESIFAIVTPTRRKTSSDPKPLT--YIFF 216
           SP + + TS  DS  +  + +   S   I TP  ++TSS P PLT  Y+ F
Sbjct: 141 SPGRDIGTSSRDSANVSRSSSMMSS-HPIPTPAIQRTSSIPNPLTPSYVVF 190


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = -3

Query: 359 PLKSVATSDGDSKVLKVTITTRESIFAIVTPTRRKTSSDPKPLTYIF---FKKQTERIFQ 189
           P  +   SD     L +  T  + I   + PT       P P+ ++F   F+    RIF 
Sbjct: 369 PYSNKKDSDSSPTALVMDFTATDRISKPLDPTEAPADCSPLPIVWVFNDEFQLVAYRIF- 427

Query: 188 YKSAIIRLI 162
           Y  AI + I
Sbjct: 428 YADAISKSI 436


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 3   LRTGKSLCSESTEIE*KTLCIVLRIIYKVKMKEIHVVICYVCSD 134
           L+T K +C + +E+E +T   +L +   + M  I  V   +C+D
Sbjct: 238 LKTHKHVCHDPSEVEEETEPRILGLRSSIAMLAIVTVFVSLCAD 281


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 286 IDSRVVIVTLRTLLSPSEVATDFKGL*EHEVITKGTIA 399
           I SR++++ L T + P+E  T    L    V++ GT+A
Sbjct: 102 ITSRILVMDLLTKIIPTEKITGIVLLHADRVVSTGTVA 139


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 250 EVLRRVGVTMAKIDSRVVIVTLRTLLSPSEVATDFKGL*EHEVITKGTIAL*SVWRSSLD 429
           E+L   G TM  + + VV  +L+ +L  + + +    L    ++TK    + + W +SLD
Sbjct: 488 EMLASAGQTMNILATEVVTQSLQQVLGSTVLVSLMGALQWPLILTKLGYLIDNPWNNSLD 547

Query: 430 R 432
           R
Sbjct: 548 R 548


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 398  AIVPFVMTSCSHSPLKSVATSDGDSKVLKVTITTRESIFAIVTPTRRKTSSDPKPLT 228
            A  PF   S  ++P  S  T+DG  K     +TT    F+    +  K SS+  P T
Sbjct: 863  ANAPFSFASAFNAPKPSTNTADG--KDSASNLTTPSPAFSFGNNSGVKASSNNNPST 917


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = +3

Query: 120  YVCSDSAQVALCIRD*TYDR*FVLKNSF-G------LFFKENICQWLRVRRSLAARWSNN 278
            YV S + +V   +    Y+R +++  SF G      LF+K+NI ++ R +    A W+ +
Sbjct: 1188 YVMSIAQEVRKLVDGKLYERYYLITRSFIGVAALQLLFYKKNISEFEREKVEDVAHWAQS 1247

Query: 279  GEDRFA 296
                 A
Sbjct: 1248 SLSEMA 1253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,278
Number of Sequences: 5004
Number of extensions: 40138
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)