Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h03
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    28   3.7  
10_06_0145 + 11215895-11216860                                         27   6.5  
05_03_0217 + 10401876-10401948,10401962-10402233                       27   6.5  
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949...    27   6.5  
01_01_0927 + 7332980-7333186,7334511-7335269,7336287-7336442,733...    27   6.5  
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686     27   8.6  
03_04_0100 - 17279903-17280107,17280131-17280678                       27   8.6  
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918     27   8.6  

>03_01_0423 +
           3240224-3240394,3241464-3241628,3242322-3242339,
           3242494-3242836,3244138-3248540,3248928-3249107,
           3249108-3250892,3251055-3252173
          Length = 2727

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 437 SIRSSEDRQTDYRAIVPFVMTSCSHSPLKSVATSDGD 327
           SI S++D +TD R IVP    +CS  P+ S+   D +
Sbjct: 172 SILSTKDIETD-RHIVPLWQLTCSFVPMASLVRHDSN 207


>10_06_0145 + 11215895-11216860
          Length = 321

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 365 HSPLKSVATSDGDSKVLKVTITTRESIFAIVTPTRRKTSSDPKP 234
           H+P  S +    D+K+L+ T TT     A   P    T+  P P
Sbjct: 189 HAPALSASV---DAKILQATTTTTADTAAAAAPASTNTTPPPSP 229


>05_03_0217 + 10401876-10401948,10401962-10402233
          Length = 114

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = -3

Query: 503 FFFKWKSLL*IMRWLNSGQIYRSIRSSEDRQTDYRAIVPFVMTSCSHSPLKSVATSDGDS 324
           F  +W  +    RWL   +  R  R    R+   R          S   +  +   DG++
Sbjct: 5   FSLRWMRMAGRRRWLKRRRSGRCRRGLRSRRCTAREGFR------SKEEMLGIVWRDGNA 58

Query: 323 KVLKVTITTRESIFAIVTPTRRKTSSD 243
           K ++VT+T  E    +VT T  +   D
Sbjct: 59  KEMEVTLTQTEMAKVVVTTTGGEVEDD 85


>05_03_0190 +
           9485701-9485806,9487182-9487368,9489662-9489733,
           9490089-9490160,9490514-9490585,9490845-9490916,
           9491355-9491426,9491503-9491577,9492008-9492073,
           9492144-9492188,9492276-9492340,9492429-9492811,
           9492878-9493076,9493150-9493308,9493386-9493504,
           9493652-9493862,9493993-9494224,9494307-9494457,
           9494550-9494870
          Length = 892

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 464 WLNSGQIYRSIRSSEDRQTDYRAIVPFVMTSCSHS 360
           W  SG++   + S +    DY  I PF+   CS++
Sbjct: 54  WNISGELCSGLASDKTNWDDYPNINPFIKCDCSYN 88


>01_01_0927 +
           7332980-7333186,7334511-7335269,7336287-7336442,
           7336615-7337538,7338905-7339201
          Length = 780

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 39  EIE*KTLCIVLRIIYKVKMKEIHVVICYVCSDSAQVALC 155
           ++  K +C++  I+ K       ++  Y C +SA V  C
Sbjct: 322 QVRMKAICVLEAIVRKQDTDPYSIITSYFCENSASVVRC 360


>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
          Length = 959

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +3

Query: 189 LKNSFGLFFKENICQW-----LRVRRSLAARWSNNGEDRFASRNCYFENFAISVRSSHGL 353
           ++    LFFKE + +W       V   L+   S +GE   AS N   EN  I    +  L
Sbjct: 628 IEECLALFFKEELLEWRCDNCSGVSHHLSTTGSKDGEQIMASTN---ENTIIDRDQTVQL 684

Query: 354 QRTVRTRSHHKRHDSSIICLAIFA*PYGS 440
            +  R     K  +S  +       P+GS
Sbjct: 685 DKVARQSEQSKNLESLALECTSSKQPHGS 713


>03_04_0100 - 17279903-17280107,17280131-17280678
          Length = 250

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 237 ATDIYFL*KTNRKNFSIQISDHTFNPGYKELP-VRSPSRHNK*RHE 103
           ATD++ L   +  N  IQ  D T+ PG++  P  + P    + R E
Sbjct: 139 ATDLFTLYVNSTPNRGIQPGDETWAPGWRGAPATKKPLPRRRRRRE 184


>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
          Length = 250

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 470 MRWLNSGQIYRSIRSSE-DRQTDYRAIVPFVMTSCSHSPLKSVATSDGDSKVLKVTITTR 294
           ++W  SG+  R +RS     +  +R          S   +  +   DG++K ++VT+T  
Sbjct: 155 LKWRRSGRCQRGLRSQRCTAREGFR----------SKEEMLGIVWRDGNAKEMEVTLTQT 204

Query: 293 ESIFAIVTPTRRKTSSD 243
           E    +VT T  +   D
Sbjct: 205 EMAKVVVTMTGGEVEDD 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,318
Number of Sequences: 37544
Number of extensions: 219235
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)