Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h03
         (505 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68162-2|AAB08425.1|  628|Homo sapiens thrombopoietin receptor p...    29   9.2  
U68162-1|AAB08424.1|  635|Homo sapiens thrombopoietin receptor p...    29   9.2  
M90103-1|AAA69972.1|  579|Homo sapiens c-myeloproliferative leuk...    29   9.2  
M90102-1|AAA69971.1|  635|Homo sapiens c-myeloproliferative leuk...    29   9.2  
AL139289-2|CAI23380.1|  635|Homo sapiens myeloproliferative leuk...    29   9.2  
AL139289-1|CAB92756.2|  549|Homo sapiens myeloproliferative leuk...    29   9.2  

>U68162-2|AAB08425.1|  628|Homo sapiens thrombopoietin receptor
           protein.
          Length = 628

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 FGLFFKENICQWLRVRRSLAARWSNNGEDRFASRNCY--FENFAISVRSSHGLQRTVRTR 374
           F L  K   CQW +   + +  +  +   R   R+ Y  +EN     +++ GLQ    +R
Sbjct: 285 FTLDLKNVTCQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSR 344

Query: 375 SHHKRHDSSIICLAI 419
            H K  + SII + +
Sbjct: 345 CHFKSRNDSIIHILV 359


>U68162-1|AAB08424.1|  635|Homo sapiens thrombopoietin receptor
           protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 FGLFFKENICQWLRVRRSLAARWSNNGEDRFASRNCY--FENFAISVRSSHGLQRTVRTR 374
           F L  K   CQW +   + +  +  +   R   R+ Y  +EN     +++ GLQ    +R
Sbjct: 292 FTLDLKNVTCQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSR 351

Query: 375 SHHKRHDSSIICLAI 419
            H K  + SII + +
Sbjct: 352 CHFKSRNDSIIHILV 366


>M90103-1|AAA69972.1|  579|Homo sapiens c-myeloproliferative
           leukemia virus type K protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 FGLFFKENICQWLRVRRSLAARWSNNGEDRFASRNCY--FENFAISVRSSHGLQRTVRTR 374
           F L  K   CQW +   + +  +  +   R   R+ Y  +EN     +++ GLQ    +R
Sbjct: 292 FTLDLKNVTCQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSR 351

Query: 375 SHHKRHDSSIICLAI 419
            H K  + SII + +
Sbjct: 352 CHFKSRNDSIIHILV 366


>M90102-1|AAA69971.1|  635|Homo sapiens c-myeloproliferative
           leukemia virus type P protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 FGLFFKENICQWLRVRRSLAARWSNNGEDRFASRNCY--FENFAISVRSSHGLQRTVRTR 374
           F L  K   CQW +   + +  +  +   R   R+ Y  +EN     +++ GLQ    +R
Sbjct: 292 FTLDLKNVTCQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSR 351

Query: 375 SHHKRHDSSIICLAI 419
            H K  + SII + +
Sbjct: 352 CHFKSRNDSIIHILV 366


>AL139289-2|CAI23380.1|  635|Homo sapiens myeloproliferative
           leukemia virus oncogene protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 FGLFFKENICQWLRVRRSLAARWSNNGEDRFASRNCY--FENFAISVRSSHGLQRTVRTR 374
           F L  K   CQW +   + +  +  +   R   R+ Y  +EN     +++ GLQ    +R
Sbjct: 292 FTLDLKNVTCQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSR 351

Query: 375 SHHKRHDSSIICLAI 419
            H K  + SII + +
Sbjct: 352 CHFKSRNDSIIHILV 366


>AL139289-1|CAB92756.2|  549|Homo sapiens myeloproliferative
           leukemia virus oncogene protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 FGLFFKENICQWLRVRRSLAARWSNNGEDRFASRNCY--FENFAISVRSSHGLQRTVRTR 374
           F L  K   CQW +   + +  +  +   R   R+ Y  +EN     +++ GLQ    +R
Sbjct: 292 FTLDLKNVTCQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSR 351

Query: 375 SHHKRHDSSIICLAI 419
            H K  + SII + +
Sbjct: 352 CHFKSRNDSIIHILV 366


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,159,537
Number of Sequences: 237096
Number of extensions: 1146799
Number of successful extensions: 2006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)