Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h03
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-1|CAA92680.1|  213|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...    28   3.3  
U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z68316-1|CAA92680.1|  213|Caenorhabditis elegans Hypothetical
           protein K08E4.2 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 182 SAIIRLIPDTKSYLCGVRADITNDDMNFFH 93
           +A +  +P    +LC +R D+  DD N FH
Sbjct: 154 AAALYTLPRKPEFLCRLRGDMPEDDDNQFH 183


>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 335 DGDSKVLKVTITTRESIFAIVTPTRRKTSSDPKPLTYIFFKKQTERIFQYK 183
           D D +  K T++T E++   +    +   S+P  L  +  ++  + IF YK
Sbjct: 85  DKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVTIEETPKNIFTYK 135


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 335 DGDSKVLKVTITTRESIFAIVTPTRRKTSSDPKPLTYIFFKKQTERIFQYK 183
           D D +  K T++T E++   +    +   S+P  L  +  ++  + IF YK
Sbjct: 88  DKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVTIEETPKNIFTYK 138


>U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical
           protein F38E1.6 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 208 CFLKKIYVSGLGSDEVLRRVGVTMAKIDSRVVIVTLRTLLS 330
           C  +KIY+    + + LRR+ +T+A + S ++ + +  +LS
Sbjct: 196 CDSEKIYIIAAFAGDCLRRILLTIAGLTSLIIPILIMIILS 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,499
Number of Sequences: 27780
Number of extensions: 219749
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)