Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h03
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.78 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.5  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    21   7.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 RRVGVTMAKIDSRVVIVTLRTLLSPSEVATDFKGL*EHEVITKGTIA 399
           RR  V  A+ ++ VV  T +++L  +    +  GL E EV+   TIA
Sbjct: 30  RRSLVDDARFETLVVKQTKQSVLEEARQRANDAGLTEEEVVLAKTIA 76


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 272 TPTRRKTSSDPKPLTYIFFKKQTERIFQYKSAIIR 168
           T  RRK +  P P   +F +   E    Y+  +++
Sbjct: 25  TTPRRKKNKKPLPTECVFCRNNGEEEAYYRKHLLK 59


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 464 WLNSGQIYRSIRSSEDRQTDYRAIVPFVMTSCSHS 360
           W+N+  I      +E+ +   R+ VPF +   S S
Sbjct: 275 WVNTSVIRNYTLFNENSEAAARSFVPFSIERSSQS 309


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 321 SSQSNNYDSRIDLRHCYSNAPQD 253
           SS+  + D     + CY  APQD
Sbjct: 26  SSEPLDNDKEQSAQVCYRGAPQD 48


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 321 SSQSNNYDSRIDLRHCYSNAPQD 253
           SS+  + D     + CY  APQD
Sbjct: 26  SSEPLDNDKEQSAQVCYRGAPQD 48


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 407 DYRAIVPFVMTSCSHSPL 354
           DY  I+P ++T+   +PL
Sbjct: 31  DYTKIMPDILTAIGQTPL 48


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 107  MNFFHFNLVYNSEYDTKRFL 48
            +N FH+ LV NS    +RF+
Sbjct: 1539 INEFHWTLVSNSVKMQRRFV 1558


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 107  MNFFHFNLVYNSEYDTKRFL 48
            +N FH+ LV NS    +RF+
Sbjct: 1535 INEFHWTLVSNSVKMQRRFV 1554


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 167 LIPDTKSYLCGVR 129
           +IP T+ ++CGV+
Sbjct: 533 VIPGTQEHVCGVK 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,098
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)