Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28h02
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0449 - 8598025-8598115,8598244-8598332                           29   2.3  
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940...    27   5.2  
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809...    27   5.2  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    27   9.1  
06_01_0226 - 1730931-1731527,1732290-1732469                           27   9.1  

>03_02_0449 - 8598025-8598115,8598244-8598332
          Length = 59

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 170 TALKKSVPAAILVWAFHRIPSREGLTSRRIIGYLKR 277
           +ALK +     L W+ H++   +GL   +IIGY  R
Sbjct: 20  SALKNTNSQHSLSWSHHKLQKAKGLQVMQIIGYAAR 55


>06_01_1136 +
           9407282-9407663,9408075-9408227,9408336-9408539,
           9408709-9409174,9409434-9409575
          Length = 448

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = -3

Query: 267 YPIIRLEVRPSLDGILWKAQTRMAAGTDFFKAVLTLYLLLRTVAPEFV*HVFD 109
           +P+I   +R +LDG+L+ + + +++    F  +  + LL+  ++  F+  ++D
Sbjct: 326 FPMIFHALRLNLDGLLFSSSSPLSSDNRRFSVMTAVLLLVIFLSANFIPSIWD 378


>02_05_0601 -
           30278455-30278572,30280211-30280676,30280748-30280951,
           30281065-30281220,30281336-30281738
          Length = 448

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = -3

Query: 288 ILKCRFKYPIIRLEVRPSLDGILWKAQTRMAAGTDFFKAVLTLYLLLRTVAPEFV*HVFD 109
           +L     +PI+   +R ++DG+L+ +   +++    F A+    L +  +A  FV +++D
Sbjct: 327 VLHLMLVFPIVFHALRFNMDGLLFPSARPLSSDNRRFGAITAALLTVIFLAANFVPNIWD 386


>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 178 EEIRPSCHSSLGLP*NPVQRR-PNFEANNRVLE 273
           +EI+P C+S LG   N  + R  NF  NNR+ +
Sbjct: 700 DEIKPLCNSMLGGTMNSFKTRILNFVVNNRMYQ 732


>06_01_0226 - 1730931-1731527,1732290-1732469
          Length = 258

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 99  VYVRRKRATRIRELQFGVKGIKSK 170
           + +RR+ ATRIREL+  VK +  K
Sbjct: 219 IEIRREWATRIRELELRVKQLVDK 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,046
Number of Sequences: 37544
Number of extensions: 236890
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)