Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g22
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.12 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.5  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   5.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   7.7  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 279 RKKSRRHRNSVFLLRR*YYFFSEFAFFTQIREKLFISYLLYSRHSNILKFLCY 121
           R K   H +  F +   +Y+F  F FF     +  I+  ++   SN++ F C+
Sbjct: 58  RLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCF 110


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = +1

Query: 121 IAEKFKYITMSGVKQVRNKKLL---PDLRKE--GELTKEIILSTKEKHGVPVTSRLFSHH 285
           I ++F+  ++S +   + +++L   PD+ +E    + +EI++S  E H   ++   F+ H
Sbjct: 410 IEKQFQSTSISAMTSEKQEQILRECPDIDEELGKSILREIVVSGDEVHWDDISGLEFAKH 469

Query: 286 TLASVRKLSFYFPYNLPD 339
           +L    K +  +P+  PD
Sbjct: 470 SL----KEAVVYPFLRPD 483


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +1

Query: 460 NTCDKLPSSGVPM---GHPLR 513
           N  D+L SSG+PM   GHP R
Sbjct: 268 NIVDRLSSSGIPMVRLGHPAR 288


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 245 FSFVDNIISLVSSPSLRKSGRSFL 174
           + F DN+ISL+ S  L KS R+ L
Sbjct: 540 YEFSDNVISLLKSRRLDKSDRNEL 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,292
Number of Sequences: 5004
Number of extensions: 57002
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)