Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28g21
(345 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 36 0.001
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 1.1
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 25 4.4
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 25 4.4
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 24 5.8
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 7.6
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 24 7.6
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 24 7.6
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 24 7.6
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 7.6
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 36.3 bits (80), Expect = 0.001
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 139 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 318
++R F RSS ++ S K ++D +R+T + + V+EQ ++ K+ H
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664
Query: 319 DVIVRP 336
DV VRP
Sbjct: 665 DVYVRP 670
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 107 GSTAHNH-YANDGDKYYFCKIHF 42
G ++H + + ND ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -2
Query: 194 EYVDCWASADDRIANSLTHTFKLFKKVPSGSTAHNHYANDGDKY---YFCKIHFRNDLWA 24
E V C ++++++ +H K G+T H+ D Y YF K F ++
Sbjct: 191 EIVFCAIASNEQVRGYGSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQGFTKEITL 250
Query: 23 LRSL 12
+S+
Sbjct: 251 DKSI 254
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 4.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 226 NQRKTNK-IR*SVVVEQS-EIER*SFKKKYHRKDVIV 330
N+ +TN IR V +++ IE K KYH KDVI+
Sbjct: 152 NEPETNSLIRMDVGIDECLHIEFEYSKNKYHLKDVII 188
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.2 bits (50), Expect = 5.8
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -3
Query: 340 FLVSQSHPFYDISF*NSIALSHSALLRRSI*FYSSSFDSELSTSPLAFWSTSIAG 176
F + + ++D S+ N + L S+ Y +F++ S + + +W +IAG
Sbjct: 352 FFETNQNSYFDDSY-NQESCGFPGL--NSLSSYEGNFEASFSNASMPYWIQTIAG 403
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 2 IRLIDSVEPTSRFENVFYKNSIYRHHLHNDCELCF 106
IRLIDS P+S NV+ + + H + F
Sbjct: 237 IRLIDSANPSSNSGNVYSPVVFQKQNNHTNTIFTF 271
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 11 IDSVEPTSRFENVFYKNSIY 70
I EPTS F NV + IY
Sbjct: 208 ISKAEPTSLFRNVLHGKRIY 227
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 23.8 bits (49), Expect = 7.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 8 LIDSVEPTSRFENVFYKNSIYRHHLHNDCEL 100
L++ ++ + VFY ++ R+ LH+ CE+
Sbjct: 165 LLNQLKDILSQDGVFYMVAVARNKLHSICEI 195
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 23.8 bits (49), Expect = 7.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 232 FDSELSTSPLAFWSTSIAGPALMIESR 152
++ +T P FW T IA ++ ++R
Sbjct: 168 YNFSFNTDPFEFWITRIADDQVLFDTR 194
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 2 IRLIDSVEPTSRFENVFYKNSIYRHHLHNDCELCF 106
IRLIDS P+S NV+ + + H + F
Sbjct: 237 IRLIDSANPSSNSGNVYSPVVFQKQNNHTNTIFTF 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,484
Number of Sequences: 5004
Number of extensions: 21378
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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