Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g21
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    20   7.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    20   7.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 115 TFLKSLKVWVREFAI-RSSAL 174
           T  K +K+W+  FAI R SA+
Sbjct: 389 TIPKEMKIWIPAFAIHRDSAI 409


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 179 WASADDRIANSLTHTFKLFKKVPSGSTAHNHYANDG 72
           WA   D    S   +FK F K P   T   ++   G
Sbjct: 39  WADDSDEEELSARPSFKTFDKGPKNYTTPVNFVAGG 74


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 38  FENVFYKNSIYRHHLHNDCEL 100
           F     KN++Y+    N+CE+
Sbjct: 211 FRRSITKNAVYQCKYGNNCEI 231


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 38  FENVFYKNSIYRHHLHNDCEL 100
           F     KN++Y+    N+CE+
Sbjct: 8   FRRSITKNAVYQCKYGNNCEI 28


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 338 FGLTITSFL*YFFLKLYRSISLCSTT--TLYLIL 243
           FGL  T+ L  + + L R  S+ STT  TL ++L
Sbjct: 224 FGLGFTTDLLSYNILLRRHYSMNSTTYVTLTIVL 257


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  FENVFYKNSIYRHHLHNDCE 97
           + N  Y N+ Y ++ +N+C+
Sbjct: 333 YNNNNYNNNNYNNNYNNNCK 352


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 209 SFSLLEYVDCWASADDRIANSLTHTFKL 126
           SF L +  D W        N+ T TFK+
Sbjct: 36  SFELSKNGDEWTFTSSSGDNTYTKTFKM 63


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 209 SFSLLEYVDCWASADDRIANSLTHTFKL 126
           SF L +  D W        N+ T TFK+
Sbjct: 38  SFELSKNGDEWTFTSSSGDNTYTKTFKM 65


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = -2

Query: 110 SGSTAHNHYANDGDKYYFCKIHFRNDL 30
           S +   N Y N  + +Y    H R  L
Sbjct: 107 SSNDPKNQYKNQNNNHYTSHQHLRTHL 133


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 122 KKVPSGSTAHNHYANDGDKYY 60
           K+V SGST    + ++GD+ +
Sbjct: 337 KQVLSGSTGKVAFDDNGDRIF 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,339
Number of Sequences: 438
Number of extensions: 1279
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)