Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g20
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    67   2e-12
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    34   0.021
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    29   0.61 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.1  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.9  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    27   2.5  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   4.3  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   4.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.3  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   7.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.5  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   9.9  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   9.9  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    25   9.9  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    25   9.9  

>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
 Frame = +3

Query: 327 KNRPREISSKKPVPVV-QVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIK 503
           K+ P+E+SSKKPV    +V    KK  RDPRFD L G   K +  +NYGFL+E R+ +I+
Sbjct: 14  KHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVKKNYGFLNEYRVSEIQ 73

Query: 504 AARQELRETTDPEK 545
             R EL+   D E+
Sbjct: 74  QLRDELKICKDQER 87



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 165 EDNERT-SIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNRPR 341
           +D ER  SIR  L SL  +  + L+E+   +V  E     KE+V    K F  +   + +
Sbjct: 83  KDQERAESIRQTLKSLLSKMERHLEEERAERVMHEFRAQEKERVKEGKKPFYLKRNEQKK 142

Query: 342 EISSKK 359
            I   K
Sbjct: 143 LIQMDK 148


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 159  EIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEA 269
            E+++ ER S + ELA L  E LQ L+EK+GA V+  A
Sbjct: 2396 ELQEAERKS-QQELADLVTESLQVLQEKVGATVFARA 2431


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
 Frame = +3

Query: 279 TKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDKKQFS 458
           +K K NVP K+FK+  K     IS K+     ++   KK  V    +  + G++D    S
Sbjct: 23  SKNKENVPGKLFKK-FKCPSLVISEKRK----ELPLRKKPRVNYSEYGSVDGKYDSAYVS 77

Query: 459 QNYGFLSELRMKDIKAARQELRE-TTDPEKQIKXXXXXXXXNDQHKAC 599
           +N   L+ ++  +      E R+ +T  +KQ           D  K C
Sbjct: 78  ENVSGLATIKEANRLILNHERRDPSTVIKKQFSVPKPIKGHEDISKLC 125


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = +3

Query: 156 DEIEDNERTSIRSELASLSFEELQQLKE--KIGAKVYKEALFGTKEKVNVPPKVFKRENK 329
           + I   E   ++ E      E+ ++L+E  KI AK  KE     KE++ +  +  +R  +
Sbjct: 88  ERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQ--QRRKE 145

Query: 330 NRPREISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAA 509
            R +++  K+    ++   +  KE +  + +    +  +K+ + N  F+++ +  ++   
Sbjct: 146 ERDQKLREKEEAQRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVAD-KTDELNEF 204

Query: 510 RQELR 524
            +E R
Sbjct: 205 EKEFR 209


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 93  DLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKE 266
           D I+Y LLK      + +  ++E+E +E   +R  L  L    LQ  K  I  ++ K+
Sbjct: 347 DTIRYYLLKRGRLTSDSNFDIEELEKDEEHDLRRSLGVL-LSRLQSKKLFISNEIQKQ 403


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 123 SCSEDNEDSHVD-EIEDNERTSIRSELASLSFEELQQLKEK 242
           S  EDN     D E +D+ +    S L    FEEL+ L+EK
Sbjct: 38  SVDEDNTSVFEDVEAQDSRQKRFSSTLEGNRFEELRSLREK 78


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 93  DLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKE 266
           DLI  +L +M    D + ++V    D+E   + + L  LS  E   +  K+   + KE
Sbjct: 237 DLIAQMLKQMLDQSDKDRAYVKIEGDDEVVLLMNNLGGLSMLEFSAISHKVKEALAKE 294


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 156 DEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNR 335
           DE+   E  S+    AS S+E+L         K   E+LF +   + V     KR++KN 
Sbjct: 130 DELLATEPISLSINPASTSYEKLTVSSPNSFLKNQDESLFLSSSPITVSQGT-KRKSKNS 188

Query: 336 PREISSKK 359
              +  KK
Sbjct: 189 NSTVKKKK 196


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 387 VKKKEVRDPRFDPLCGEFDKKQFSQNYGFLS-ELRMKDIKAARQELRETTDP 539
           V+KKE+++ +F+    E  K+  + NY  +S   + K + +  +E  +  +P
Sbjct: 220 VQKKEMKEKKFEKQLLELRKRTRTSNYSRMSIREKRKHVHSYDEEFEKPNEP 271


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 150 HVDEIEDNERTSIRSELASLSFEELQ 227
           HV++ ED  RT ++S+ A +S  E+Q
Sbjct: 93  HVEDKEDLNRTVVKSQEAIVSIPEIQ 118


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 618 CPTC-FFCMLYADHSIFAIIYVILFVSL 538
           C  C  FC+L+ + S+F I Y  LF +L
Sbjct: 511 CEVCNSFCLLFDERSLFKIPYHELFCAL 538


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 249 AKVYKEALFGTKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDPRFDPL 428
           A+ Y++   G K    V P  F+R+  +   E S ++ VP+V+ + V+K+E  +     +
Sbjct: 8   ARAYRQRKVGIK---TVMPIYFERDIPDFDEEASLQRTVPLVE-SGVEKEEEEEKHLQQV 63

Query: 429 CGE 437
             E
Sbjct: 64  INE 66


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 132 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKV 311
           E   DSHVD IED    + + +  +   E L+ L   +    ++  L     +++V  K 
Sbjct: 21  ETEYDSHVDSIEDIHSLASKRKKLNEKKENLEDL-TLLKTSAFELKLNELIREISVRGKY 79

Query: 312 FKRENK--NRPREISSKKPV 365
           F+  N    + +++  K PV
Sbjct: 80  FRHANTFVEKIKDLIFKTPV 99


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 354 KKPVPVVQVAHVKKKEVRDPRFDPLCGEFD---KKQFSQNYGFLSELRMKDIKAAR 512
           K P   VQ   +K     DP+F  + G  D   K +  +   F +E++    K AR
Sbjct: 405 KNPANDVQYISIKALNEYDPKFTNVTGSVDWRSKLESQRGAVFATEMKNNSCKLAR 460


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 HVDEIEDNERTSIRSELASLSFEELQQLKE 239
           H+D++ +N+ T   S + S +FE LQ + E
Sbjct: 295 HLDDLLENQSTGFFSMIDSSNFEGLQLVYE 324


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 174 ERTSIRSELASLSFEELQQLKEKIGAKVYKEA---LFGTKEKVNVPPKVFKRENKNRPRE 344
           ++TS++  +   + ++    K     K+ KEA   +     K +V PK  K+E K     
Sbjct: 5   DKTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSP 64

Query: 345 ISSKKPVPVVQVAHVKKKE 401
             SKK V   + +  KKKE
Sbjct: 65  EPSKKSVKKQKKS--KKKE 81


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 111 LLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEK 290
           +L + C  D  +     IE+  +TS +     ++FEE Q + +KIGA  Y E      E 
Sbjct: 113 ILLVGCKVDLRNDP-KTIEELSKTSQKP----ITFEEGQVVAQKIGAYKYLECSAKLNEG 167

Query: 291 VN 296
           VN
Sbjct: 168 VN 169


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 42  LVEKSKINNPYYKSKPCDLIQYLLLKM 122
           L+ +++I NPYY   P DL+   +  +
Sbjct: 344 LISRAEILNPYYDYIPPDLVDLFITNL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,080
Number of Sequences: 5004
Number of extensions: 44232
Number of successful extensions: 187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)