Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28g20
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0011 + 20217882-20217989,20218085-20218272,20218355-202184... 39 0.003
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 33 0.27
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 31 1.1
02_02_0047 + 6369566-6369661,6369857-6369916,6370320-6370385 30 1.9
01_07_0366 + 43088835-43089099,43089311-43089876 29 2.6
07_03_1726 - 29062654-29064414 29 3.4
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 29 4.5
12_01_0107 - 843820-846335,846400-846511 28 5.9
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 28 5.9
01_06_1802 + 39978634-39978880,39979016-39979431 28 5.9
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 7.8
>09_06_0011 +
20217882-20217989,20218085-20218272,20218355-20218421,
20218464-20218538,20219100-20219152,20219661-20219715,
20219812-20219886,20220495-20220612,20220720-20220766,
20220853-20220954
Length = 295
Score = 39.1 bits (87), Expect = 0.003
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 29/189 (15%)
Frame = +3
Query: 159 EIEDNERTSIRSELASLSFEELQQLKE--KIGAKVYKEALFGTKEKVNVPPKVFKRENKN 332
E + + + LA + F ELQ+ + +G + + A K+ +R +K
Sbjct: 47 ESDSDAERELERALADVPFGELQRARADGSLGGRGFSAAAAAQKKA--------RRASKK 98
Query: 333 RPREISSK-KPVPVVQVAHVKKKE-------------------------VRDPRFDPLCG 434
RP EIS+K +P ++ V KKE VRDPRF+P+ G
Sbjct: 99 RPMEISTKVRPPRFREIIQVPKKEQQPVGFSSIDYYSYLVVENWSNVYVVRDPRFEPVYG 158
Query: 435 EFDKKQFSQNYGFLSELRMKDIKAARQE-LRETTDPEKQIKXXXXXXXXNDQHKACKRNK 611
DK+ F + Y FL + + K Q+ ++++ DP + + Q ++ +
Sbjct: 159 PVDKEGFRKRYNFLFDDELPAEKEKLQKSIKKSKDPNAIEEMKSRITWIDKQLRSHPKKN 218
Query: 612 LDREVAQKN 638
++ E+ +++
Sbjct: 219 VESEILREH 227
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 32.7 bits (71), Expect = 0.27
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 14/236 (5%)
Frame = +3
Query: 6 FYDLVTKGQL*ILVEKSKINNPYYKSKPCDLIQYLLLKMSCSEDNEDSHVDEIEDNERTS 185
F DL+ GQ + + ++ Y+ P + ++ +S DNE + ++ +
Sbjct: 26 FSDLLKNGQRQM---RYRLKKKYFNGIPANEVR-TTSPLSSMTDNEWKQLVDMWSTPKHK 81
Query: 186 IRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKV-NVPPK---VFKRENKNRPREISS 353
+ + + EL Q + G++ Y + + K +VPP +FK + + +
Sbjct: 82 EKC-IKNKDSRELVQYHQMTGSRSYVAQCYVMQTKFKDVPPTAIDIFKDTHCSSKSGFNE 140
Query: 354 KKPVPVVQV-AHVKK--KEVRDPR--FDPLCGEFDKKQFSQNYGFLSELRMKDIKAAR-- 512
+ Q+ A+V + +E +DP+ + + K F +N G S K+ KAA
Sbjct: 141 NAKDAIAQMEAYVAQPTEEGKDPKTPVEAVAHVLPKSTFLRNVGMQSTEMKKNAKAAAMN 200
Query: 513 ---QELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREG 671
+EL EK + D HK + K EVA+KN ++ EK +G
Sbjct: 201 DHVRELESELHAEK-MGSARMQLQIADLHKQLEDQK---EVARKNEEETEKLRHQG 252
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 132 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKV 311
E++ED + D++ED E + + + E ++K K+ EA+ G+K+KV K+
Sbjct: 95 EEDEDEYEDDVED-EDEEVEEDDDNDFMEPALKVKRKVPQNRKTEAMQGSKKKVASKQKL 153
Query: 312 FK 317
K
Sbjct: 154 TK 155
>02_02_0047 + 6369566-6369661,6369857-6369916,6370320-6370385
Length = 73
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 15 LVTKGQL*ILVEKSKINNPYYKSKPCDLIQYLLLKMS-CSEDNEDSHVDEIEDNERTS 185
LV L +L+ + YY+ KPC I Y +++ CS E S++ +E R S
Sbjct: 16 LVAVALLLLLLHDQRRRVLYYRMKPCFQIWYETIRIQLCSTGVEGSNIGGVESEYRRS 73
>01_07_0366 + 43088835-43089099,43089311-43089876
Length = 276
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 99 IQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQ 230
++ L LK + ++D H D +D++R S S +S S LQQ
Sbjct: 156 LRKLKLKQQKQQQSDDHHNDNDDDDDRNSSSSSSSSNSNSNLQQ 199
>07_03_1726 - 29062654-29064414
Length = 586
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 132 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQ 230
+D++D VD+IE+ ER R + +ELQQ
Sbjct: 63 DDDDDDDVDDIEELERRMWRDRVRHKRLKELQQ 95
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.7 bits (61), Expect = 4.5
Identities = 28/126 (22%), Positives = 52/126 (41%)
Frame = +3
Query: 45 VEKSKINNPYYKSKPCDLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEEL 224
+E+ K N K K ++ Q LL CS DN D + +E N +R L +L +++
Sbjct: 900 IEELKRENTLLKGKNAEMEQELLKAQKCSHDNMDK-LHGVERN-YLHLRDNLKNLE-DKI 956
Query: 225 QQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEV 404
L+++ K + + + + P+ + PV +V + H E+
Sbjct: 957 SNLEDENHLLRQKALSLSPRHSRTMSHPI--GSSPCSPKSLIESSPVKIVPLPH-NPTEL 1013
Query: 405 RDPRFD 422
R R +
Sbjct: 1014 RRSRMN 1019
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 48 EKSKINNPYYKSKPCDLIQYLLLKMSCSEDNEDSHVDEIEDNE-RTSIRSELASLSF 215
E+ ++ ++ DLI+ L+ +S S+D E+ VD E++E ++RS++ S F
Sbjct: 244 ERVQLYEGFHVESHEDLIEELVRSLSLSDD-EEEFVDIAENSELNDALRSQMGSCRF 299
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 273 FGTKEKVNVPPKVFKRENKNRPREISSKKPV----PVVQVAHVKKKEVRDPRFDP 425
+G+ E V KV K ++R RE S + P + A VK + DP++DP
Sbjct: 420 YGSSETPQVSSKVPKDRLRHRHREKSGEAVYGTSHPEPKPAEVKPADYSDPKYDP 474
>01_06_1802 + 39978634-39978880,39979016-39979431
Length = 220
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 276 GTKE-KVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDP 413
GT+ +++ P + R NRPR ++ + PVVQ A + + P
Sbjct: 60 GTRSLRMHASPPDYGRRRTNRPRRVARTRSPPVVQEAEREPPAPQQP 106
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +3
Query: 123 SCSEDNEDSHVDEIEDNERTSIRSE-LASLSFEELQQLKEKI----GAKVYKEALFGTKE 287
S S+D+EDS + + ER R+E LA+++ + + +E + G K E L +E
Sbjct: 153 SGSDDSEDSEEERRREEERRRRRAERLAAMAARAIAEREEAVAKLEGEKASLEKLLAERE 212
Query: 288 K 290
K
Sbjct: 213 K 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,223
Number of Sequences: 37544
Number of extensions: 231485
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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