Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g17
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF324489-1|AAK49910.1|  351|Caenorhabditis elegans F44C8.7-like ...    28   6.9  
AF016438-4|AAB65894.2|  351|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF324489-1|AAK49910.1|  351|Caenorhabditis elegans F44C8.7-like
           protein protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +3

Query: 315 VTLFRCKS---KGDKLSDDHQAFRITVVNNKIPHRIVFMLRKTYLSTVMKKHALPLYITV 485
           + LF+ KS    G KL +     R+  +   +P  +  +    Y   +    A    +TV
Sbjct: 78  IVLFKTKSFEKTGKKLYEHIWKNRVETLKVSVPAVVYAIQNNLYYIALANIDATTYSVTV 137

Query: 486 LFRNIVTTLDYILLAKPRTNNYEIFVQ 566
             R + T L  +++   + +NY+   Q
Sbjct: 138 QLRILTTALLSVIILNQKLSNYQWLAQ 164


>AF016438-4|AAB65894.2|  351|Caenorhabditis elegans Hypothetical
           protein F44C8.7 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +3

Query: 315 VTLFRCKS---KGDKLSDDHQAFRITVVNNKIPHRIVFMLRKTYLSTVMKKHALPLYITV 485
           + LF+ KS    G KL +     R+  +   +P  +  +    Y   +    A    +TV
Sbjct: 78  IVLFKTKSFEKTGKKLYEHIWKNRVETLKVSVPAVVYAIQNNLYYIALANIDATTYSVTV 137

Query: 486 LFRNIVTTLDYILLAKPRTNNYEIFVQ 566
             R + T L  +++   + +NY+   Q
Sbjct: 138 QLRILTTALLSVIILNQKLSNYQWLAQ 164


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 268 FLESYSAIMGRSWGLLSIFFFKE 200
           F  +YS I+G  WG LSI+FF E
Sbjct: 147 FSIAYSFIVGAQWG-LSIYFFDE 168


>Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical
           protein F29F11.3 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 446 CNEK-ACSSALYHCSVPQHCNDFG 514
           C +K ACS  +  C VP H +D G
Sbjct: 186 CLQKIACSMGILKCMVPDHADDLG 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,892
Number of Sequences: 27780
Number of extensions: 270523
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)