Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g14
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z68342-6|CAD89740.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical protein
            F14B4.3 protein.
          Length = 1127

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 298  SGNHLKVHRRRDRSPIAHTKAPRVMRRRTSEVQDNQFYTQAPVVNRF 438
            +G+HL   +R+D  P+ +T+  R    RT +  D  F  Q P V R+
Sbjct: 1059 AGSHLLKKKRKDDEPLDYTETQRC---RTCDKDDQVFLLQVPRVFRY 1102


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 312 KSPSAERSFTNSSHEGPSSDETANFRSSR*SILYTS 419
           KS  +  S T ++ +GP SD+T+   SS  S  +TS
Sbjct: 374 KSTESTTSVTQTTEKGPDSDDTSPVGSSTSSSAFTS 409


>Z68342-6|CAD89740.1|  418|Caenorhabditis elegans Hypothetical
           protein F38E11.6b protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +2

Query: 374 DGELQKFKIINFIHKRQ--LLIDFI*SK 451
           D ELQKFK INF+ K++   L +FI +K
Sbjct: 337 DAELQKFKRINFMEKKKEVYLDEFIKNK 364


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 552 LETLELISQGVWRIYVVDVYGLQ*PLNTRW 641
           + +++LI   V RI+   VYG++ P+N  W
Sbjct: 216 MASVQLIISSVRRIHDAAVYGIKDPINVSW 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,953
Number of Sequences: 27780
Number of extensions: 279862
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)