Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g07
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    29   0.69 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    28   1.2  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    28   1.2  

>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 51  NPSKIK*FRECKCVHKIKCGNNSVL 125
           NP+K+  F+E +C   I CG NS++
Sbjct: 316 NPAKLANFQEIECFVLIACGENSLI 340


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 608 VCVLYHRIPHLSTKNHPRNLHRLHCRALLSLYLSF 504
           + + Y  + +LST NH R L   H   L +L  SF
Sbjct: 838 IAIAYGCLKYLSTINHSRTLFATHAHQLTNLTKSF 872


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 109 VITQYCLDPSEPENVRFRG 165
           V+T+ CLDPS+P  +R  G
Sbjct: 381 VLTEVCLDPSQPYTLRLSG 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,797
Number of Sequences: 5004
Number of extensions: 54517
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)