Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28g06
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 29 0.45
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 28 1.4
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 27 2.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 3.2
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 4.2
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 26 4.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 5.6
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 5.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.4
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.4
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 332 NWFYFIKFVTNWLLRKNFTNSLVSMVMSA 246
N+FY IK N LL T+ +SM+MSA
Sbjct: 1156 NYFYNIKLAKNMLLNTEDTSFKISMMMSA 1184
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 543 GEIGRNGELVEFEKVILEGNNTNG 614
G+ G GE +EF+K I NT+G
Sbjct: 122 GKYGTQGEYIEFKKTIWHEQNTDG 145
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = -3
Query: 649 TSNFTAFVLHYTPLVLFPSNITFSNSTNS 563
T+ ++++ ++ T ++ PSNIT SN+TN+
Sbjct: 356 TAEYSSYCMNGT--IITPSNITISNTTNT 382
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 391 SITSYLLSSSQVLQHFPCFLTGFILLNSLQIGCYEKILQTV 269
++ + L L HF FL I+L +L+I YEK T+
Sbjct: 296 TLHNLLADGDFTLFHFTLFLLSKIILLNLKISDYEKAFSTL 336
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 417 NKDNRKDEVEVREGVKGRNGVNEVREGDFRGXNSNGVNEVRE 542
NKDN ++ + + K +NE+++ G N +NEV+E
Sbjct: 828 NKDNFQNMINFDKRTKVTRILNEIKKFQSVGYMFNPINEVQE 869
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -3
Query: 388 ITSYLLSSSQVLQHFPCFLTGFILLNSLQIGCYEKILQTVW 266
+ S+ + SQ++ +P F++ + ++ E+ LQT+W
Sbjct: 37 LLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQTIW 77
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 619 YTPLVLFPSNITFSNSTNSPF 557
Y+ L +F + ++F+NST PF
Sbjct: 1276 YSQLTIFANRVSFNNSTAIPF 1296
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = -2
Query: 422 FICYLCYCSPFHYLISLVFQPSFTTFSMFFNWFYFI-KF----VTNWLL 291
F+C Y FHYL +V+ F + W Y + K VT WLL
Sbjct: 519 FVCSSRYLLDFHYLTQVVY-GYMIGFGVGLFWVYLVGKLRSLGVTKWLL 566
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 205 SGLGP*PVGRLNLRIGFFRLMRGYLKTQLLHYNYIADSFNTFTPLYNFYL 56
+G+G +G L + F+R+++ +T H + F T L + YL
Sbjct: 3811 AGIGKLDIGLLMEKPTFYRILQLLCETSANHSTSLKHEFGTLNTLLSKYL 3860
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 422 FICYLCYCSPFHYLISLVFQPSFTTFSMFFNWFYFIKFVTNWLL--RKNFTNSLVSMVMS 249
++ Y CYC+ F L ++F F +S + FV W+L K NSL+ M
Sbjct: 52 YLIYFCYCANFIALFRVIFGTIF-VYSPDGITPFMTDFV-RWILIYLKGSINSLLYMASF 109
Query: 248 AFLISKL 228
IS L
Sbjct: 110 TKQISLL 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,768
Number of Sequences: 5004
Number of extensions: 43148
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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