Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g06
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81549-2|CAB04473.1|  167|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U40798-7|AAA81477.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    30   1.7  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    30   1.7  
Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm rece...    28   6.8  
AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm rece...    28   6.8  
Z81523-8|CAB04245.1|  290|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    27   9.0  

>Z81549-2|CAB04473.1|  167|Caenorhabditis elegans Hypothetical
           protein F55C9.3 protein.
          Length = 167

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -2

Query: 353 TTFSMFFNWFYFIKFVTNWL-LRKNFTNSLVS 261
           T F+ FFN F  IKF+ ++L L+KN  +SL+S
Sbjct: 136 TFFNCFFNTFKQIKFIFSFLNLKKNTVHSLLS 167


>U40798-7|AAA81477.1|  342|Caenorhabditis elegans Hypothetical
           protein R13A1.8 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 258 HGNQTVCKIFS*QPICNEFNKIKPVKKHGKCCKTWLEDKRY 380
           H  +   ++F  Q +C  F+ ++  +   KC ++W+E  RY
Sbjct: 269 HMTEENVRVFCAQIVCTVFDFLRDTEATPKCAESWIELMRY 309


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 374 LVFQPSFTTFSMFFNWFYFIKFVTNWLLRKNFTNSLVSMVMSAFLI 237
           L F+P F+  S+F N F+F+      L+RK   +S ++++M++  I
Sbjct: 37  LYFEPHFSAASIFINLFHFL-----ILIRKPLRSSSINIIMASVAI 77


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 374 LVFQPSFTTFSMFFNWFYFIKFVTNWLLRKNFTNSLVSMVMSAFLI 237
           L F+P F+  S+F N F+F+      L+RK   +S ++++M++  I
Sbjct: 37  LYFEPHFSAASIFINLFHFL-----ILIRKPLRSSSINIIMASVAI 77


>Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical
           protein M28.9 protein.
          Length = 861

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 417 NKDNRKDEVEVREGVKGRNGVNEVREGDFRGXNSNGVNEVREGEIGRNG 563
           NKD +K + + ++  K   G  E  +GD    N N  +    GEIGRNG
Sbjct: 730 NKDKKKKKKKSKKD-KEEEGSAEKADGD---ANKNPQDPAAPGEIGRNG 774


>AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 174 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 413 YLCYCSPFHYLISLVFQPSFTTF-SMFF 333
           Y C CS F  ++ ++ QP+  T+ S FF
Sbjct: 50  YFCCCSIFFSIVDVIVQPNIQTYQSSFF 77


>AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 175 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 413 YLCYCSPFHYLISLVFQPSFTTF-SMFF 333
           Y C CS F  ++ ++ QP+  T+ S FF
Sbjct: 50  YFCCCSIFFSIVDVIVQPNIQTYQSSFF 77


>Z81523-8|CAB04245.1|  290|Caenorhabditis elegans Hypothetical
           protein F32H2.8 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -2

Query: 407 CYCSPFHYLISLVFQPSFTTFSMFFNWFYFIKFVTNWLLRKN 282
           CYC   +Y + +V    F  F    N  Y    +   LLR N
Sbjct: 69  CYCQKHNYRLEIVEDTEFRNFCQQENSMYRRHCIVGHLLRNN 110


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 434 FTIIFICYLCYCSPFHYLISLVF-----QPSFTTFSMFFNWFYFIKF 309
           F ++  CY C+ SPFH++    F       S TT   F ++ YF+ F
Sbjct: 368 FWLLKHCYKCFTSPFHFVTFTDFWLGDQMNSLTT--AFLDFQYFVCF 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,584
Number of Sequences: 27780
Number of extensions: 240265
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)