Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28g04
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.65
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.5
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 3.5
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 4.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 6.1
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 6.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 8.0
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 25 8.0
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 8.0
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.1 bits (62), Expect = 0.65
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Frame = +1
Query: 415 NEESASIENKSGSEDINDSSSLRNVD---GTKGVDPQKIKLDDKLELSRIRTDSVQEDVL 585
+ S+ E++S SED + SSS + + +K D D + + S +DS E
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 586 RIQD-----DEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTS 699
D + SS+ NT T T E + Q T TS
Sbjct: 297 EDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTS 339
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 526 LDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSL 702
LD + ++ RT ++ + + + YSS H + N + TIKE N+I+ + L
Sbjct: 481 LDSQNFIASFRTFTLAIKISLLTNKVYDMWYSSLHGKANLKAATIKEIVNEIEAWRQQL 539
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.5
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 406 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRI-RTDSVQEDV 582
+R N +SA++ G+E D + N V + D+K+ R+ + S ++DV
Sbjct: 1831 KRHNIDSANLSR--GTERDED---IPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDV 1885
Query: 583 LRIQDDEETEEYSSK 627
L D+ E E+ SSK
Sbjct: 1886 LNKIDESEIEQASSK 1900
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 415 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQ 594
+ ESA +E S I ++ G++ PQK K +K + +V ED L +
Sbjct: 127 DSESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKEKQGNKQGSKTEESPNVDEDELESE 186
Query: 595 DDEET 609
+E+T
Sbjct: 187 PEEKT 191
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 415 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLR-I 591
+EE +E + +EDI + +N+D + ++ LD E +I T + + I
Sbjct: 133 DEEKDELEEERIAEDIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIHLTDATGNPI 192
Query: 592 QDDEETEEYSS 624
+D E++ S
Sbjct: 193 EDSSESDSEES 203
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 6.1
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 454 EDINDSSSLRNVDGTKGVDPQKIKLDDK-LELSRIRTDSVQEDVLRIQDDEETEEYSSKH 630
++I+ SL N+D DP + K++ K L SR++ SV++ LRI T +YSS
Sbjct: 17 KEISSFGSLTNID--LHTDPYE-KVEAKALSRSRLKNQSVKKTDLRI-----TNDYSSLF 68
Query: 631 VRPNTQTVTIKE 666
V + TI +
Sbjct: 69 VSIENKKNTIPD 80
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +1
Query: 430 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEET 609
S+ NK + + +NV+ +PQ+ K + LE+ + + + + +
Sbjct: 69 SVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENESINS 128
Query: 610 EEYSSKHVRPNTQT 651
SSK TQ+
Sbjct: 129 SSSSSKECSTQTQS 142
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 445 SGSEDINDSSSLRNVDGTK-GVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEY 618
S S+ + S + V T+ K + + + + + S+++D+L+ ++DEE EE+
Sbjct: 278 SQSQTVETSGPSKEVPTTQPDASAAKPRTEFDFQTANQKFQSMKDDLLKGKNDEEAEEF 336
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 544 LSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTR 690
LS I DS +D+ ++++ EEY+ V P V KES + R
Sbjct: 335 LSPILMDSFGDDLQKLKETYGEEEYNLYLVDPYRYRVKRKESFYDLAVR 383
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 418 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQD 597
E ++S+EN S DSSS + + ++P+ + D+ + + + V++D D
Sbjct: 88 ELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDE--DDKHVTVEIVEDD-----D 140
Query: 598 DEE 606
DEE
Sbjct: 141 DEE 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,312
Number of Sequences: 5004
Number of extensions: 50739
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -